Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015521.1 Corchorus capsularis cultivar CVL-1 contig15542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29625

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--46
2
23.0
2
100
0
92
0
50
0
50
1.00
571--601
15
2.1
15
100
0
62
35
0
19
45
1.51
601--627
2
13.5
2
100
0
54
51
0
0
48
1.00
895--1000
56
1.9
56
94
0
185
46
3
4
45
1.42
895--975
2
42.5
2
78
9
71
46
3
3
45
1.38
6164--6267
16
6.5
16
80
4
104
31
37
19
11
1.87
6164--6267
48
2.2
48
83
10
124
31
37
19
11
1.87
7125--7203
16
4.9
16
78
3
88
31
32
22
12
1.92
7125--7202
32
2.4
33
82
6
106
30
33
23
12
1.92
7125--7204
9
9.8
9
67
24
52
32
32
22
12
1.91
8191--8233
19
2.2
20
87
4
61
6
16
0
76
0.99
8787--9109
49
6.6
49
89
1
450
30
14
32
22
1.94
9122--9312
41
4.7
41
88
4
255
38
21
24
15
1.92
10337--10527
51
3.7
50
82
8
215
34
18
6
39
1.78
10347--10600
101
2.5
101
83
5
298
32
18
7
41
1.78
10337--10600
51
5.2
50
77
12
209
33
18
7
40
1.78
10634--10738
50
2.1
50
90
0
165
33
15
8
42
1.77
13455--13487
2
16.5
2
100
0
66
51
0
0
48
1.00
18875--18922
16
3.0
16
84
0
60
45
35
8
10
1.68
20077--20102
8
3.2
8
100
0
52
38
11
11
38
1.78
23307--23783
35
13.9
35
83
9
354
33
20
16
29
1.95
23539--23598
25
2.5
24
89
5
93
36
21
13
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23563--23783
105
2.1
104
94
0
397
33
22
14
29
1.94
24959--25035
37
2.1
37
87
2
111
38
11
14
35
1.82

Tables:   1

The End!