Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015522.1 Corchorus capsularis cultivar CVL-1 contig15543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55307

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6927--6951
10
2.5
10
100
0
50
48
20
8
24
1.76
7881--7919
6
6.5
6
100
0
78
30
0
15
53
1.42
10106--10141
18
2.1
17
94
5
63
63
8
16
11
1.49
15396--15442
24
1.9
25
95
4
87
27
10
10
51
1.70
15462--15520
27
2.2
27
93
0
100
61
8
23
6
1.49
17491--17590
50
2.0
50
84
7
132
38
5
12
45
1.63
18969--19004
10
3.4
10
92
7
54
86
0
2
11
0.68
38549--38721
55
3.1
55
76
9
208
29
18
17
34
1.94
39543--39581
19
2.0
20
90
5
62
43
23
15
17
1.87
40371--40435
30
2.1
31
88
2
96
29
20
3
47
1.65
40704--40874
22
7.7
22
80
11
120
35
11
15
36
1.84
40705--40855
44
3.4
44
83
5
146
35
12
15
35
1.86
40705--40902
22
8.9
22
79
9
111
34
10
17
37
1.84
41100--41332
22
10.5
22
71
12
129
43
9
12
34
1.75
41413--41479
19
3.5
19
81
2
80
43
8
22
25
1.82
41470--41762
22
13.5
22
67
14
117
39
8
14
37
1.77
41470--41594
44
2.9
43
80
10
130
39
8
13
38
1.76
41661--41764
23
4.6
23
75
3
86
37
8
13
40
1.75
41707--41775
22
3.1
22
79
4
59
37
10
13
39
1.78
43432--43456
2
12.5
2
100
0
50
48
0
0
52
1.00
53665--53703
18
2.3
17
83
12
53
28
2
2
66
1.18
54406--54434
13
2.2
13
100
0
58
41
0
6
51
1.28

Tables:   1

The End!