Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015524.1 Corchorus capsularis cultivar CVL-1 contig15545, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30382

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
248--340
16
5.9
16
85
1
134
36
37
18
7
1.79
248--341
32
3.0
32
88
1
154
36
37
18
8
1.81
249--340
48
1.9
47
91
2
148
35
38
18
7
1.79
1238--1279
22
1.9
22
85
9
59
52
7
9
30
1.61
3943--3971
2
14.5
2
100
0
58
48
0
0
51
1.00
4384--4447
26
2.4
27
82
7
78
29
7
9
53
1.61
9570--9595
1
26.0
1
100
0
52
0
0
0
100
0.00
18082--18132
25
2.0
25
100
0
102
39
15
15
29
1.89
23563--23635
36
2.0
36
86
0
101
26
19
10
43
1.83
29647--29687
12
3.5
12
83
6
57
60
2
0
36
1.10
29886--29920
17
2.1
17
88
0
52
17
22
0
60
1.37
30006--30089
41
2.0
42
93
2
143
47
4
4
42
1.45

Tables:   1

The End!