Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015527.1 Corchorus capsularis cultivar CVL-1 contig15548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112954

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--242
31
2.1
29
88
5
90
20
15
12
50
1.77
19426--19455
16
1.9
15
93
6
51
43
0
3
53
1.17
21706--21730
13
1.9
13
100
0
50
36
0
16
48
1.46
22524--22600
30
2.6
30
85
0
100
49
14
25
10
1.75
22849--22893
15
3.0
15
90
0
72
17
33
24
24
1.96
25127--25170
15
2.9
15
93
0
79
27
56
6
9
1.55
38028--38095
35
1.9
35
82
5
84
44
16
7
32
1.75
38458--38537
33
2.4
33
87
2
106
46
17
6
30
1.73
58179--58440
109
2.4
109
89
3
398
48
2
11
37
1.54
59322--59385
29
2.2
30
94
5
114
46
0
18
34
1.49
59505--59598
27
3.5
26
83
11
86
48
1
12
37
1.48
60130--60192
22
2.8
23
76
11
60
36
17
15
30
1.91
60223--60337
22
5.1
22
77
6
79
39
17
9
33
1.82
60275--60359
23
3.7
23
79
1
82
37
14
9
38
1.78
60253--60360
45
2.4
44
80
4
108
37
16
10
36
1.83
60265--60566
22
14.1
22
72
10
101
32
16
9
40
1.82
60516--60566
19
2.6
20
90
6
86
25
17
11
45
1.83
60711--60879
22
7.7
22
76
13
152
34
14
10
41
1.79
60696--60795
44
2.3
44
80
3
112
35
15
10
40
1.80
60645--60798
66
2.3
66
80
4
168
34
14
9
40
1.79
61087--61138
22
2.4
22
93
0
86
38
17
9
34
1.82
61144--61202
22
2.7
22
79
10
66
35
16
10
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61238--61421
22
8.3
22
74
10
99
38
17
10
33
1.84
61293--61421
22
5.9
22
79
3
125
37
14
11
35
1.83
61292--61423
44
3.0
44
78
5
151
37
15
11
34
1.84
61248--61423
66
2.6
66
76
10
153
39
16
10
33
1.83
61587--61624
19
2.0
20
85
15
53
63
2
5
28
1.30
61762--61838
37
2.1
35
88
7
109
58
12
15
12
1.64
61884--62074
96
2.0
97
97
1
366
46
3
16
33
1.64
71288--71366
36
2.2
36
97
2
151
16
27
12
43
1.84
72613--72754
47
3.0
47
100
0
284
21
14
25
38
1.91
78268--78310
7
6.1
7
100
0
86
13
27
16
41
1.86
78551--78626
39
2.0
37
92
5
125
60
10
6
22
1.52
79897--80121
70
3.1
70
84
9
297
48
0
12
38
1.42
79891--80129
78
3.2
77
88
7
341
49
0
12
38
1.44
99808--99900
48
1.9
48
95
0
168
16
3
49
31
1.61
103317--103369
27
2.0
27
85
10
74
13
9
11
66
1.46
108586--108744
87
1.8
87
86
5
232
30
7
22
38
1.82
108586--108776
87
2.2
88
83
5
228
29
7
22
39
1.82
110825--110862
3
12.7
3
100
0
76
65
0
0
34
0.93
112322--112419
25
4.1
25
74
20
86
33
26
0
39
1.57
112429--112496
26
2.6
26
90
0
109
54
10
1
33
1.43
112493--112531
18
2.2
18
85
0
51
51
5
2
41
1.38
112756--112803
22
2.1
23
88
3
71
39
8
39
12
1.73

Tables:   1

The End!