Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015529.1 Corchorus capsularis cultivar CVL-1 contig15550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60570

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77--120
20
2.2
20
84
8
54
36
2
0
61
1.09
988--1031
23
1.9
23
90
0
70
0
29
0
70
0.88
3213--3258
23
2.0
23
100
0
92
34
8
17
39
1.80
4902--5009
45
2.4
44
80
7
112
40
17
10
31
1.83
4849--5281
22
19.7
21
71
11
203
36
14
10
38
1.80
5030--5195
90
1.9
89
81
6
201
34
13
8
43
1.74
4849--5577
44
16.8
45
69
17
216
36
15
9
38
1.80
5363--5579
22
9.8
22
71
15
112
35
13
10
41
1.79
5494--5579
21
3.8
23
78
15
83
33
13
10
41
1.79
5628--5730
22
4.7
22
72
13
86
35
18
9
35
1.84
5823--5919
22
4.5
21
77
18
92
36
18
12
32
1.88
5821--5919
43
2.3
43
88
10
148
35
19
12
33
1.88
7331--7421
38
2.4
37
80
3
101
54
12
18
14
1.70
7547--7611
31
2.1
31
88
0
94
55
4
12
27
1.56
7478--7782
159
1.9
160
91
4
501
49
4
12
34
1.60
7703--7764
31
1.9
32
84
12
83
45
3
16
35
1.63
8122--8146
12
2.1
12
100
0
50
48
8
36
8
1.62
12726--12799
29
2.5
29
80
4
76
37
16
14
31
1.89
12843--12881
20
2.0
20
89
0
60
17
30
28
23
1.97
32763--32846
29
3.0
28
85
13
77
40
7
32
20
1.79
32776--32846
29
2.5
28
95
4
126
40
8
28
22
1.83
33012--33043
16
2.0
16
100
0
64
25
6
18
50
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33981--34008
3
9.3
3
100
0
56
0
35
0
64
0.94
41182--41206
13
1.9
13
100
0
50
48
0
8
44
1.32
41461--41489
2
14.5
2
100
0
58
51
0
48
0
1.00
60096--60120
13
1.9
13
100
0
50
32
0
28
40
1.57

Tables:   1

The End!