Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015530.1 Corchorus capsularis cultivar CVL-1 contig15551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49240

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4650--4698
25
2.0
25
91
0
80
16
32
16
34
1.91
10562--10754
97
2.0
97
98
0
377
40
13
16
30
1.86
16797--16827
16
1.9
16
93
0
53
41
29
9
19
1.83
21120--21198
31
2.5
31
78
8
97
36
20
10
32
1.86
30011--30038
2
14.0
2
100
0
56
50
0
0
50
1.00
34628--34674
11
4.2
11
83
5
67
78
19
2
0
0.85
34628--34675
6
8.3
6
86
9
64
79
18
2
0
0.84
34631--34682
11
4.5
11
80
7
50
78
17
3
0
0.89
41368--41400
15
2.3
15
89
5
50
57
6
9
27
1.53
41422--41454
6
5.5
6
100
0
66
54
15
0
30
1.41
41451--41495
13
3.5
13
90
3
74
55
8
13
22
1.65
41451--41503
25
2.1
25
89
6
81
58
9
11
20
1.60
48143--48226
38
2.1
40
80
12
93
50
5
13
30
1.65
48467--48499
15
2.3
15
89
5
50
57
6
9
27
1.53
48521--48553
6
5.5
6
96
0
57
57
15
0
27
1.38
48550--48594
13
3.5
13
90
3
74
55
8
13
22
1.65
48550--48602
25
2.1
25
89
6
81
58
9
11
20
1.60

Tables:   1

The End!