Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015531.1 Corchorus capsularis cultivar CVL-1 contig15552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46422

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
943--1011
27
2.6
27
83
0
84
14
15
24
44
1.84
1192--1216
12
2.1
12
100
0
50
24
28
8
40
1.83
1402--1568
55
3.0
55
90
6
266
43
14
8
33
1.75
3396--3651
51
5.1
49
76
7
248
42
5
15
36
1.69
3391--3624
101
2.3
102
86
3
337
42
5
15
35
1.71
4360--4471
47
2.4
48
84
1
145
48
8
19
23
1.77
4503--4569
31
2.1
31
86
5
89
47
7
19
25
1.75
4432--4588
72
2.2
71
78
7
167
48
8
17
25
1.76
4736--4769
7
4.7
7
89
7
50
67
0
17
14
1.23
4739--4769
15
2.1
15
93
0
53
70
0
16
12
1.16
4740--4853
35
3.2
36
79
12
112
59
4
21
14
1.53
4943--5153
21
9.5
21
73
12
122
52
7
20
19
1.70
5019--5074
15
3.9
15
74
9
62
57
5
21
16
1.59
9118--9157
5
8.4
5
83
10
57
62
0
15
22
1.32
12560--12738
89
2.0
89
96
0
331
26
22
16
34
1.95
16742--16805
31
2.2
28
86
8
83
15
28
25
31
1.96
23440--23471
15
2.1
15
100
0
64
34
9
31
25
1.87
25051--25099
14
3.4
14
86
13
73
0
4
8
87
0.65
25051--25099
15
3.3
15
91
2
82
0
4
8
87
0.65
25428--25473
23
2.0
24
86
4
67
43
28
13
15
1.83
25799--25838
6
6.7
6
91
0
62
52
12
2
32
1.52
26677--26717
6
6.8
6
97
0
73
14
17
0
68
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26967--27007
22
1.9
21
90
5
64
14
41
9
34
1.79
32106--32155
23
2.2
23
100
0
100
12
20
18
50
1.78
33050--33084
18
1.9
18
94
0
61
57
8
20
14
1.63
36486--36531
20
2.3
20
96
0
83
23
19
10
45
1.82

Tables:   1

The End!