Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015532.1 Corchorus capsularis cultivar CVL-1 contig15553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43425

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
567--602
16
2.2
17
90
5
56
13
63
0
22
1.29
4274--4301
2
14.0
2
100
0
56
50
50
0
0
1.00
8595--8619
8
3.1
8
100
0
50
52
12
12
24
1.72
9675--9761
26
3.3
26
64
17
70
44
21
10
22
1.82
9675--9784
54
2.0
54
96
0
202
43
22
10
23
1.83
20451--20711
107
2.5
106
91
1
416
34
21
19
23
1.96
20855--20900
24
1.9
24
95
0
83
41
23
28
6
1.79
21241--22245
119
8.5
119
88
1
1407
32
25
24
16
1.96
21640--21677
19
2.0
19
90
10
60
26
36
15
21
1.93
21246--22213
238
4.1
238
91
0
1551
32
25
24
16
1.96
23608--23655
22
2.3
21
83
13
64
39
22
16
20
1.92
27486--27572
33
2.6
31
78
18
95
43
13
18
24
1.86
31118--31149
3
10.7
3
93
0
55
31
0
31
37
1.58
31585--31629
18
2.8
16
81
15
56
0
6
13
80
0.91
35662--35799
2
75.5
2
67
17
50
49
0
0
50
1.05
35696--35837
46
3.1
46
73
11
164
49
0
2
48
1.13
35712--35799
37
2.5
36
80
12
110
52
0
0
47
1.00
35655--35851
92
2.1
98
90
8
320
47
0
2
50
1.12
38135--38164
6
5.0
6
100
0
60
50
0
16
33
1.46

Tables:   1

The End!