Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015534.1 Corchorus capsularis cultivar CVL-1 contig15555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41634

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2415--2567
59
2.5
60
94
3
263
41
11
10
36
1.75
3821--3846
10
2.6
10
100
0
52
23
7
19
50
1.73
5131--5182
23
2.2
22
81
18
61
15
5
15
63
1.48
5133--5182
24
2.1
24
85
14
68
16
4
16
64
1.44
5790--5871
17
4.8
17
66
13
60
39
12
14
34
1.84
5790--6445
35
18.7
35
83
5
740
37
10
19
32
1.87
17342--17379
17
2.2
18
90
4
60
28
13
34
23
1.92
17739--18030
156
1.9
155
79
9
335
34
18
16
31
1.92
19949--19992
19
2.4
19
88
11
65
54
20
9
15
1.68
20871--21679
408
2.0
407
94
0
1413
33
18
18
29
1.95
40805--40953
74
2.0
74
100
0
298
30
26
0
42
1.55

Tables:   1

The End!