Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015536.1 Corchorus capsularis cultivar CVL-1 contig15557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33142

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1570--2055
259
1.9
259
98
0
945
33
23
11
32
1.90
3647--3699
26
2.0
26
100
0
106
30
11
22
35
1.89
7773--7832
30
2.0
30
87
6
86
10
43
25
21
1.83
7948--7978
15
2.1
15
100
0
62
6
35
0
58
1.24
14780--14937
3
52.3
3
72
8
106
27
61
5
6
1.41
14781--14923
45
3.2
44
76
10
148
27
60
5
6
1.44
16637--17110
30
15.6
30
91
2
585
32
17
18
31
1.94
16635--17110
121
3.9
121
88
3
611
32
17
18
31
1.94
17164--17401
118
2.0
117
95
0
431
24
18
19
37
1.94
21893--21917
2
12.5
2
100
0
50
0
48
0
52
1.00
22025--22093
22
3.2
22
62
25
56
36
7
4
52
1.49
22027--22095
21
3.2
21
63
25
54
37
7
4
50
1.50
22017--22105
43
2.1
43
100
0
178
38
8
4
48
1.55
28311--28374
3
21.3
3
75
12
60
32
60
3
3
1.28
29560--29695
69
2.0
69
89
0
209
33
14
30
20
1.93
29720--29863
72
2.0
72
91
0
234
32
17
29
20
1.96
29527--30077
165
3.3
164
86
4
712
30
17
30
20
1.96
29792--30077
96
3.2
93
79
14
328
30
17
31
21
1.96
29910--30129
81
2.7
80
91
1
341
32
19
27
20
1.96
32106--32132
2
13.5
2
100
0
54
48
0
0
51
1.00
32158--32535
192
2.0
190
93
3
643
39
6
10
44
1.64

Tables:   1

The End!