genome.fa.s15538.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015538.1 Corchorus capsularis cultivar CVL-1 contig15559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17343

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2442--2509	30	2.2	32	89	5	104	29	16	5	48	1.69
2452--2517	31	2.1	31	88	5	98	31	15	6	46	1.70
2833--2916	22	3.8	22	96	0	150	36	14	14	34	1.86
2788--2969	22	8.2	22	80	8	106	34	10	17	37	1.84
2922--2969	21	2.2	21	88	3	69	27	4	22	45	1.70
3090--3374	22	12.8	22	68	17	78	41	9	13	35	1.77
3249--3416	44	3.8	44	79	7	182	42	10	11	35	1.75
3246--3399	66	2.3	66	78	6	159	42	9	12	34	1.76
3253--3419	88	1.9	88	86	4	239	43	10	12	34	1.76
3148--3418	22	12.4	22	71	14	138	43	9	13	33	1.76
3500--3566	19	3.5	19	91	2	107	43	11	20	23	1.85
3557--3637	22	3.7	22	73	6	83	37	9	12	40	1.76
3558--3679	44	2.7	45	78	7	140	38	9	13	39	1.76
3318--3948	287	2.2	287	95	1	1133	38	9	17	34	1.82
3787--3853	19	3.5	19	87	2	98	41	11	22	23	1.87
3844--4121	22	12.7	22	71	11	160	40	8	15	35	1.78
4037--4121	23	3.7	23	84	1	100	37	8	15	38	1.77
4192--4270	22	3.5	23	77	6	65	32	13	16	36	1.88
4190--4254	23	2.9	22	81	2	67	32	12	16	38	1.86
5298--5371	33	2.2	33	77	18	82	14	56	14	13	1.67
5334--5406	36	2.0	36	89	0	110	17	52	12	17	1.75
6611--6699	19	5.0	19	76	15	109	43	30	4	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6611--6704	32	2.7	34	85	9	111	43	29	4	22	1.72
8690--8817	66	1.9	66	88	3	195	24	52	16	7	1.68
8796--8872	33	2.3	33	79	0	91	19	57	18	5	1.59
8844--8902	24	2.4	24	80	2	64	16	55	16	10	1.67
9254--9293	2	20.0	2	94	0	71	47	0	0	52	1.00
14447--14498	27	1.9	27	92	0	86	25	11	38	25	1.89

Tables:   1

The End!