Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001554.1 Corchorus capsularis cultivar CVL-1 contig01554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4290
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:134 original size:42 final size:42

Alignment explanation


    Indices: 75--158  Score: 168
    Period size: 42  Copynumber: 2.0  Consensus size: 42

         65 ATTAGAATAT

                                                      
         75 TATAACTAGCTCTATTTAAAATAGACATGCTCAAGGATCGGG
          1 TATAACTAGCTCTATTTAAAATAGACATGCTCAAGGATCGGG

                                                      
        117 TATAACTAGCTCTATTTAAAATAGACATGCTCAAGGATCGGG
          1 TATAACTAGCTCTATTTAAAATAGACATGCTCAAGGATCGGG

        159 CTACCCATCC


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   42  1.00

ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29


Consensus pattern (42 bp):   
TATAACTAGCTCTATTTAAAATAGACATGCTCAAGGATCGGG
Done.