Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015540.1 Corchorus capsularis cultivar CVL-1 contig15561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6804
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31


Found at i:2770 original size:33 final size:32

Alignment explanation


    Indices: 2733--2856  Score: 142
    Period size: 33  Copynumber: 3.8  Consensus size: 32

       2723 AGTCATTTAA

                              *   **     *   
       2733 CCGGTTGTGGCCGGGCATGTCCTTGTCGCGTGG
          1 CCGG-TGTGGCCGGGCATCTCCAAGTCGCATGG

                                             
       2766 CCGGTGATGGCCGGGCATCTCCAAGTCGCATGG
          1 CCGGTG-TGGCCGGGCATCTCCAAGTCGCATGG

                   *           *             
       2799 CCGGTGTTGCGCGGGCATCGCCAAGTCGCATGG
          1 CCGGTGTGGC-CGGGCATCTCCAAGTCGCATGG

                                      
       2832 CCGGTGTTGTG-CGGGCATCTCCAAG
          1 CCGGTG-TG-GCCGGGCATCTCCAAG

       2857 GTGCGTGGCT


Statistics
Matches: 79,  Mismatches: 8, Indels: 8
        0.83            0.08        0.08

Matches are distributed among these distances:
  32    5  0.06
  33   72  0.91
  34    1  0.01
  35    1  0.01

ACGTcount: A:0.10, C:0.29, G:0.39, T:0.22


Consensus pattern (32 bp):   
CCGGTGTGGCCGGGCATCTCCAAGTCGCATGG
Done.