Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015542.1 Corchorus capsularis cultivar CVL-1 contig15563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41582
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Found at i:9058 original size:3 final size:3
Alignment explanation
Indices: 9050--9092 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
9040 GGGATGAATT
* *
9050 TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA TTA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
9093 TATTACTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:11703 original size:30 final size:30
Alignment explanation
Indices: 11667--11729 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
11657 TCTTCAAGGG
* *
11667 GGAGGGAATGATGCGCCCAAGG-CTTATCAT
1 GGAGGGAATGATGC-ACCAAGGACTTACCAT
11697 GGAGGGAATGATGCACCAAGGACTTACCAT
1 GGAGGGAATGATGCACCAAGGACTTACCAT
11727 GGA
1 GGA
11730 CTTGAAGACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.30, C:0.19, G:0.33, T:0.17
Consensus pattern (30 bp):
GGAGGGAATGATGCACCAAGGACTTACCAT
Found at i:13001 original size:30 final size:30
Alignment explanation
Indices: 12960--13017 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
12950 AGGATCAAAT
12960 GGCATCCTTGGTGCGATTCCTCCATCCAAC
1 GGCATCCTTGGTGCGATTCCTCCATCCAAC
*
12990 GGCATCTTTGGTGCGATTCCTCCATCCA
1 GGCATCCTTGGTGCGATTCCTCCATCCA
13018 TTGATGTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.16, C:0.34, G:0.21, T:0.29
Consensus pattern (30 bp):
GGCATCCTTGGTGCGATTCCTCCATCCAAC
Found at i:17710 original size:35 final size:35
Alignment explanation
Indices: 17647--18097 Score: 534
Period size: 35 Copynumber: 12.3 Consensus size: 35
17637 AGCCTGTGCC
17647 TCAGTCTTTCTTTACCTAATTTCCTTCCTTGAAATTAAG
1 TCAGTCTTTCTTTACCTAA--T--TTCCTTGAAATTAAG
17686 TCAGTCTTTCTTTACCTAATTTCCTTCCTTGAAATTAAG
1 TCAGTCTTTCTTTACCTAA--T--TTCCTTGAAATTAAG
*
17725 TCAGTCTTTCTTTACTTAATTTCCTTGAAATTAAG
1 TCAGTCTTTCTTTACCTAATTTCCTTGAAATTAAG
*
17760 TCAGTC-TTCTTTTACTTAATTTCCTTGAAATTAAG
1 TCAGTCTTTC-TTTACCTAATTTCCTTGAAATTAAG
* *
17795 TCAGT-ATTCTCTCACCTAATTTCCTTGAAATTAAG
1 TCAGTCTTTCT-TTACCTAATTTCCTTGAAATTAAG
17830 TCAGTC-TTCTTTTACCTAATTTCCTTGAAATTAAG
1 TCAGTCTTTC-TTTACCTAATTTCCTTGAAATTAAG
17865 TCAGTCTTTCTTTACCTAATTTCCTTGAAATTAAG
1 TCAGTCTTTCTTTACCTAATTTCCTTGAAATTAAG
*
17900 TCAGTC-TTCTTTTACTTAATTTCCTTGAAATTAAG
1 TCAGTCTTTC-TTTACCTAATTTCCTTGAAATTAAG
* *
17935 TCAGTC-TTCTTTTACCTAACTCCCTTGAAATTAAG
1 TCAGTCTTTC-TTTACCTAATTTCCTTGAAATTAAG
* *
17970 TCAGTCTATCTTTACCTAATTTCCTTCCTTGAAATAAAG
1 TCAGTCTTTCTTTACCTAA--T--TTCCTTGAAATTAAG
*
18009 TCAGTCTTTCTTTACCTAATTTCCTTCTTTGAAATTAGG
1 TCAGTCTTTCTTTACCTAATTT-C--C-TTGAAATTAAG
*
18048 TCAGACTTTCTTTACCTAATTTCCTTCCTTGAAATTAAG
1 TCAGTCTTTCTTTACCTAA--T--TTCCTTGAAATTAAG
*
18087 TCCGTCTTTCT
1 TCAGTCTTTCT
18098 AATGTTTTTA
Statistics
Matches: 373, Mismatches: 19, Indels: 40
0.86 0.04 0.09
Matches are distributed among these distances:
34 7 0.02
35 217 0.58
36 7 0.02
37 2 0.01
38 1 0.00
39 134 0.36
40 1 0.00
41 1 0.00
42 1 0.00
43 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.45
Consensus pattern (35 bp):
TCAGTCTTTCTTTACCTAATTTCCTTGAAATTAAG
Found at i:18141 original size:34 final size:34
Alignment explanation
Indices: 18103--18377 Score: 261
Period size: 34 Copynumber: 7.7 Consensus size: 34
18093 TTTCTAATGT
18103 TTTTACTTAA-TTACTATGAATTAAGCCTTTGTGA
1 TTTTACTTAATTTACT-TGAATTAAGCCTTTGTGA
* * * *
18137 TTTTATTTAATTTCCTTGAATTAAGTACTTTGACTGC
1 TTTTACTTAATTTACTTGAATTAAG-CCTTTG--TGA
*
18174 TGTTACTTAA-TTACTTGGAATTAAGCCTTTGTGA
1 TTTTACTTAATTTACTT-GAATTAAGCCTTTGTGA
* * *
18208 TTTTACTTAATTTCCTTGAATTAAGTACTTTGACTGCTGT
1 TTTTACTTAATTTACTTGAATTAAG--CCTT---TG-TGA
18248 TTTTACTTAA-TTACTTTGAATTAAGCCTTTGTGA
1 TTTTACTTAATTTAC-TTGAATTAAGCCTTTGTGA
* * *
18282 TTTTACTTAATTTCCTTGAATTAAGTACTTTGACTGC
1 TTTTACTTAATTTACTTGAATTAAG-CCTTTG--TGA
*
18319 TGTTACTTAA-TTACTTGGAATTAAGCCTTTGTGA
1 TTTTACTTAATTTACTT-GAATTAAGCCTTTGTGA
*
18353 TTTTACTTAATTTCCTTGAATTAAG
1 TTTTACTTAATTTACTTGAATTAAG
18378 TACTTTGACT
Statistics
Matches: 197, Mismatches: 25, Indels: 38
0.76 0.10 0.15
Matches are distributed among these distances:
34 78 0.40
35 29 0.15
36 23 0.12
37 37 0.19
38 3 0.02
39 5 0.03
40 22 0.11
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (34 bp):
TTTTACTTAATTTACTTGAATTAAGCCTTTGTGA
Found at i:18184 original size:71 final size:71
Alignment explanation
Indices: 18105--18393 Score: 508
Period size: 71 Copynumber: 4.0 Consensus size: 71
18095 TCTAATGTTT
*
18105 TTACTTAATTACTAT-GAATTAAGCCTTTGTGATTTTATTTAATTTCCTTGAATTAAGTACTTTG
1 TTACTTAATTACT-TGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTTTG
18169 ACTGCTG
65 ACTGCTG
18176 TTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTTTGA
1 TTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTTTGA
18241 CTGCTG
66 CTGCTG
*
18247 TTTTTACTTAATTACTTTGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTT
1 ---TTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTT
18312 TGACTGCTG
63 TGACTGCTG
18321 TTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTTTGA
1 TTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTTTGA
*
18386 CTGTTG
66 CTGCTG
18392 TT
1 TT
18394 TGCTTCTCTT
Statistics
Matches: 210, Mismatches: 4, Indels: 8
0.95 0.02 0.04
Matches are distributed among these distances:
70 1 0.00
71 139 0.66
74 70 0.33
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.48
Consensus pattern (71 bp):
TTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTACTTTGA
CTGCTG
Found at i:18363 original size:145 final size:145
Alignment explanation
Indices: 18100--18394 Score: 563
Period size: 145 Copynumber: 2.0 Consensus size: 145
18090 GTCTTTCTAA
*
18100 TGTTTTTACTTAATTACTATGAATTAAGCCTTTGTGATTTTATTTAATTTCCTTGAATTAAGTAC
1 TGTTTTTACTTAATTACTATGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTAC
18165 TTTGACTGCTGTTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATT
66 TTTGACTGCTGTTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATT
18230 AAGTACTTTGACTGC
131 AAGTACTTTGACTGC
*
18245 TGTTTTTACTTAATTACTTTGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTAC
1 TGTTTTTACTTAATTACTATGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTAC
18310 TTTGACTGCTGTTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATT
66 TTTGACTGCTGTTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATT
*
18375 AAGTACTTTGACTGT
131 AAGTACTTTGACTGC
18390 TGTTT
1 TGTTT
18395 GCTTCTCTTA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 147 1.00
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (145 bp):
TGTTTTTACTTAATTACTATGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATTAAGTAC
TTTGACTGCTGTTACTTAATTACTTGGAATTAAGCCTTTGTGATTTTACTTAATTTCCTTGAATT
AAGTACTTTGACTGC
Found at i:18460 original size:41 final size:41
Alignment explanation
Indices: 18353--18553 Score: 141
Period size: 41 Copynumber: 4.7 Consensus size: 41
18343 GCCTTTGTGA
* * * * * *
18353 TTTTACTTAATTTCCTTGAATTAAGTACTTTGACTGTTGTTTGC
1 TTTT-CTTAATTACCCTGAATTAAG-ACTCTAACTG-TGCTTAC
* *
18397 TTCTCTTAATTACCCTGAATTAAGACTCTAACTGTGCTTAT
1 TTTTCTTAATTACCCTGAATTAAGACTCTAACTGTGCTTAC
* * * * * *
18438 TTTTCTTACTTATCCTGGATTAAGACTTTGACTGTGTTTAC
1 TTTTCTTAATTACCCTGAATTAAGACTCTAACTGTGCTTAC
* * * **
18479 TTTTCTTAAGTACCATGAATTAAGATTTTGACTTTAACTGTGCTGGC
1 TTTTCTTAATTACCCTGAATT-A-A----GACTCTAACTGTGCTTAC
*
18526 TTATCTTAATTACCCTGAATTAAGACTC
1 TTTTCTTAATTACCCTGAATTAAGACTC
18554 CGACTGTGTT
Statistics
Matches: 122, Mismatches: 29, Indels: 15
0.73 0.17 0.09
Matches are distributed among these distances:
41 57 0.47
42 9 0.07
43 19 0.16
44 3 0.02
45 1 0.01
46 1 0.01
47 32 0.26
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.45
Consensus pattern (41 bp):
TTTTCTTAATTACCCTGAATTAAGACTCTAACTGTGCTTAC
Found at i:21711 original size:23 final size:23
Alignment explanation
Indices: 21685--21728 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
21675 TTTGCATATT
21685 TGCATTTAGTAACTTGGTATTAC
1 TGCATTTAGTAACTTGGTATTAC
*
21708 TGCATTTAGTAATTTGGTATT
1 TGCATTTAGTAACTTGGTATT
21729 GTTGCATCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.09, G:0.18, T:0.48
Consensus pattern (23 bp):
TGCATTTAGTAACTTGGTATTAC
Found at i:21734 original size:23 final size:23
Alignment explanation
Indices: 21684--21735 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
21674 TTTTGCATAT
21684 TTGCATTTAGTAACTTGGTATTA
1 TTGCATTTAGTAACTTGGTATTA
* * *
21707 CTGCATTTAGTAATTTGGTATTG
1 TTGCATTTAGTAACTTGGTATTA
21730 TTGCAT
1 TTGCAT
21736 CTCCAATTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (23 bp):
TTGCATTTAGTAACTTGGTATTA
Found at i:25669 original size:36 final size:34
Alignment explanation
Indices: 25614--25680 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
25604 GATCAGTCAG
*
25614 AAAAGTGAAAAAGGTAATCAGAGTAATTAAGTTCCA
1 AAAAGTGAAAAAGGCAATC--AGTAATTAAGTTCCA
25650 AAAAGT-AAAAAGGGCAATCAGTAATTAAGTT
1 AAAAGTGAAAAA-GGCAATCAGTAATTAAGTT
25681 TAGTAAGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 12 0.41
35 5 0.17
36 12 0.41
ACGTcount: A:0.51, C:0.07, G:0.19, T:0.22
Consensus pattern (34 bp):
AAAAGTGAAAAAGGCAATCAGTAATTAAGTTCCA
Found at i:25699 original size:30 final size:30
Alignment explanation
Indices: 25635--25733 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
25625 AGGTAATCAG
* *
25635 AGTAATTAAGTTCCAAAAAGTAAAAAGGGCAATC
1 AGTAACTAAGTT-CAATAAG-AAAAA--GCAATC
* * * * *
25669 AGTAATTAAGTTTAGTAAGGAAAAGTAATC
1 AGTAACTAAGTTCAATAAGAAAAAGCAATC
*
25699 AGTGACTAAGTTCAATAAGAAAAAGCAATC
1 AGTAACTAAGTTCAATAAGAAAAAGCAATC
25729 AGTAA
1 AGTAA
25734 ATAGTAAAGT
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
30 33 0.62
32 4 0.08
33 4 0.08
34 12 0.23
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.23
Consensus pattern (30 bp):
AGTAACTAAGTTCAATAAGAAAAAGCAATC
Found at i:25792 original size:22 final size:22
Alignment explanation
Indices: 25753--25813 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 22
25743 TGATAATCAG
*
25753 AGTAATTAG-AAAAGAGTAAAAT
1 AGTAATCAGTAAAA-AGTAAAAT
25775 AGTAATCAGTAAAAAGT--AAT
1 AGTAATCAGTAAAAAGTAAAAT
*
25795 -GATGATCAGTAAAAAGTAA
1 AG-TAATCAGTAAAAAGTAA
25814 TCAGTAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 1 0.03
20 17 0.52
22 11 0.33
23 4 0.12
ACGTcount: A:0.56, C:0.03, G:0.18, T:0.23
Consensus pattern (22 bp):
AGTAATCAGTAAAAAGTAAAAT
Found at i:25804 original size:20 final size:20
Alignment explanation
Indices: 25776--26038 Score: 225
Period size: 20 Copynumber: 12.9 Consensus size: 20
25766 GAGTAAAATA
25776 GTAATCAGTAAAAAGTAATG
1 GTAATCAGTAAAAAGTAATG
* * *
25796 ATGATCAGTAAAAAGTAATCA
1 GTAATCAGTAAAAAGTAAT-G
25817 GTAA--AG--AAAA--AATG
1 GTAATCAGTAAAAAGTAATG
* *
25831 GTAATCAGTAAAGAGTAATA
1 GTAATCAGTAAAAAGTAATG
* *
25851 GTAATCAGTAAAGAGTAATA
1 GTAATCAGTAAAAAGTAATG
*
25871 GTAATCAGTAAGAAGTAATG
1 GTAATCAGTAAAAAGTAATG
*
25891 GTAATCAGTAAAAAGTAAAAGG
1 GTAATCAGTAAAAAGT--AATG
*
25913 GTAATCAATAAAAAGTAAAGTG
1 GTAATCAGTAAAAAGT-AA-TG
*
25935 GTAATCAGTAAAAAGTAAAG
1 GTAATCAGTAAAAAGTAATG
*
25955 GTAATCAGTGAAAAGTAAAATG
1 GTAATCAGTAAAAAGT--AATG
* * *
25977 GTAATTAG-AAAAGAGAAAAAG
1 GTAATCAGTAAAA-AG-TAATG
25998 AGTAATCAGTAAAAAGTAAAATG
1 -GTAATCAGTAAAAAGT--AATG
*
26021 GTAATTAGTAAAAAGTAA
1 GTAATCAGTAAAAAGTAA
26039 AAGAAAAAAT
Statistics
Matches: 198, Mismatches: 27, Indels: 36
0.76 0.10 0.14
Matches are distributed among these distances:
14 4 0.02
15 3 0.02
16 2 0.01
17 4 0.02
18 3 0.02
19 2 0.01
20 90 0.45
21 13 0.07
22 70 0.35
23 7 0.04
ACGTcount: A:0.54, C:0.04, G:0.20, T:0.22
Consensus pattern (20 bp):
GTAATCAGTAAAAAGTAATG
Found at i:25838 original size:35 final size:34
Alignment explanation
Indices: 25767--25854 Score: 106
Period size: 35 Copynumber: 2.6 Consensus size: 34
25757 ATTAGAAAAG
** *
25767 AGTAAAATAGTAATCAGTAAAAAGTAATGATGATC
1 AGTAAAA-AGTAATCAGTAAAAAAAAATGATAATC
*
25802 AGTAAAAAGTAATCAGTAAAGAAAAAATGGTAATC
1 AGTAAAAAGTAATCAGTAAA-AAAAAATGATAATC
*
25837 AGTAAAGAGTAAT-AGTAA
1 AGTAAAAAGTAATCAGTAA
25855 TCAGTAAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
34 18 0.38
35 29 0.62
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.23
Consensus pattern (34 bp):
AGTAAAAAGTAATCAGTAAAAAAAAATGATAATC
Found at i:25860 original size:13 final size:13
Alignment explanation
Indices: 25844--25901 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
25834 ATCAGTAAAG
25844 AGTAATAGTAATC
1 AGTAATAGTAATC
*
25857 AGTAAAGAGTAAT-
1 AGT-AATAGTAATC
**
25870 AGTAATCAGTAAGA
1 AGTAAT-AGTAATC
*
25884 AGTAATGGTAATC
1 AGTAATAGTAATC
25897 AGTAA
1 AGTAA
25902 AAAGTAAAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
12 2 0.06
13 20 0.56
14 14 0.39
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (13 bp):
AGTAATAGTAATC
Found at i:25880 original size:7 final size:7
Alignment explanation
Indices: 25831--25901 Score: 58
Period size: 7 Copynumber: 10.6 Consensus size: 7
25821 AGAAAAAATG
25831 GTAATCA
1 GTAATCA
**
25838 GTAAAGA
1 GTAATCA
25845 GTAAT-A
1 GTAATCA
25851 GTAATCA
1 GTAATCA
**
25858 GTAAAGA
1 GTAATCA
25865 GTAAT-A
1 GTAATCA
25871 GTAATCA
1 GTAATCA
**
25878 GTAAGAA
1 GTAATCA
*
25885 GTAAT-G
1 GTAATCA
25891 GTAATCA
1 GTAATCA
25898 GTAA
1 GTAA
25902 AAAGTAAAAG
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
6 17 0.34
7 33 0.66
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.25
Consensus pattern (7 bp):
GTAATCA
Found at i:25918 original size:22 final size:21
Alignment explanation
Indices: 25802--26041 Score: 242
Period size: 22 Copynumber: 11.4 Consensus size: 21
25792 AATGATGATC
*
25802 AGTAAAAAGTAATCAGTAAAGA
1 AGTAAAAGGTAATCAGTAAA-A
*
25824 A--AAAATGGTAATCAGTAAAG
1 AGTAAAA-GGTAATCAGTAAAA
* *
25844 AGTAATA-GTAATCAGTAAAG
1 AGTAAAAGGTAATCAGTAAAA
* *
25864 AGTAATA-GTAATCAGTAAGA
1 AGTAAAAGGTAATCAGTAAAA
*
25884 AGT-AATGGTAATCAGTAAAA
1 AGTAAAAGGTAATCAGTAAAA
*
25904 AGTAAAAGGGTAATCAATAAAA
1 AGTAAAA-GGTAATCAGTAAAA
*
25926 AGTAAAGTGGTAATCAGTAAAA
1 AGTAAA-AGGTAATCAGTAAAA
*
25948 AGT-AAAGGTAATCAGTGAAA
1 AGTAAAAGGTAATCAGTAAAA
*
25968 AGTAAAATGGTAATTAG-AAAA
1 AGTAAAA-GGTAATCAGTAAAA
*
25989 GAGAAAAAGAGTAATCAGTAAAA
1 -AGTAAAAG-GTAATCAGTAAAA
*
26012 AGTAAAATGGTAATTAGTAAAA
1 AGTAAAA-GGTAATCAGTAAAA
26034 AGTAAAAG
1 AGTAAAAG
26042 AAAAAATATT
Statistics
Matches: 185, Mismatches: 20, Indels: 27
0.80 0.09 0.12
Matches are distributed among these distances:
19 1 0.01
20 70 0.38
21 24 0.13
22 85 0.46
23 5 0.03
ACGTcount: A:0.55, C:0.04, G:0.20, T:0.21
Consensus pattern (21 bp):
AGTAAAAGGTAATCAGTAAAA
Found at i:26015 original size:7 final size:7
Alignment explanation
Indices: 26005--26095 Score: 51
Period size: 7 Copynumber: 12.7 Consensus size: 7
25995 AAGAGTAATC
26005 AGTAAAA
1 AGTAAAA
26012 AGTAAAA
1 AGTAAAA
* **
26019 TGGTAATT
1 -AGTAAAA
26027 AGTAAAA
1 AGTAAAA
26034 AGT-AAA
1 AGTAAAA
26040 AG-AAAA
1 AGTAAAA
*
26046 AATATTAAA
1 AGTA--AAA
**
26055 GAGTAATC
1 -AGTAAAA
*
26063 AGTAAAG
1 AGTAAAA
*
26070 AGTAAAT
1 AGTAAAA
*
26077 AGTAAAG
1 AGTAAAA
26084 AGTAAAA
1 AGTAAAA
26091 AGTAA
1 AGTAA
26096 TCAGTAAAGA
Statistics
Matches: 63, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
6 9 0.14
7 43 0.68
8 5 0.08
9 3 0.05
10 3 0.05
ACGTcount: A:0.60, C:0.01, G:0.18, T:0.21
Consensus pattern (7 bp):
AGTAAAA
Found at i:26030 original size:29 final size:29
Alignment explanation
Indices: 25994--26088 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 29
25984 GAAAAGAGAA
*
25994 AAAGAGTAATCAGTAAAAAGTAAAATGGT
1 AAAGAGTAATCAGTAAAAAGTAAAATAGT
** ** * *
26023 AATTAGTAAAAAGT-AAAAGAAAAAATATT
1 AAAGAGTAATCAGTAAAAAG-TAAAATAGT
*
26052 AAAGAGTAATCAGTAAAGAGT-AAATAGT
1 AAAGAGTAATCAGTAAAAAGTAAAATAGT
26080 AAAGAGTAA
1 AAAGAGTAA
26089 AAAGTAATCA
Statistics
Matches: 50, Mismatches: 14, Indels: 5
0.72 0.20 0.07
Matches are distributed among these distances:
28 20 0.40
29 26 0.52
30 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.18, T:0.21
Consensus pattern (29 bp):
AAAGAGTAATCAGTAAAAAGTAAAATAGT
Found at i:26089 original size:14 final size:14
Alignment explanation
Indices: 25994--26095 Score: 73
Period size: 14 Copynumber: 7.1 Consensus size: 14
25984 GAAAAGAGAA
25994 AAAGAGT-AATCAGT
1 AAAGAGTAAAT-AGT
* *
26008 AAAAAGTAAAATGGT
1 AAAGAGT-AAATAGT
** *
26023 AATTAGTAAAAAGT
1 AAAGAGTAAATAGT
** *
26037 AAAAGAAAAAATATT
1 -AAAGAGTAAATAGT
26052 AAAGAGT-AATCAGT
1 AAAGAGTAAAT-AGT
26066 AAAGAGTAAATAGT
1 AAAGAGTAAATAGT
*
26080 AAAGAGTAAAAAGT
1 AAAGAGTAAATAGT
26094 AA
1 AA
26096 TCAGTAAAGA
Statistics
Matches: 67, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
13 3 0.04
14 43 0.64
15 18 0.27
16 3 0.04
ACGTcount: A:0.60, C:0.02, G:0.18, T:0.21
Consensus pattern (14 bp):
AAAGAGTAAATAGT
Found at i:26101 original size:21 final size:21
Alignment explanation
Indices: 26063--26105 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
26053 AAGAGTAATC
*
26063 AGTAAAGAGTAAATAGTAAAG
1 AGTAAAAAGTAAATAGTAAAG
26084 AGTAAAAAGT-AATCAGTAAAG
1 AGTAAAAAGTAAAT-AGTAAAG
26105 A
1 A
26106 AAAAATAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.58, C:0.02, G:0.21, T:0.19
Consensus pattern (21 bp):
AGTAAAAAGTAAATAGTAAAG
Found at i:26101 original size:28 final size:28
Alignment explanation
Indices: 25994--26103 Score: 78
Period size: 29 Copynumber: 3.9 Consensus size: 28
25984 GAAAAGAGAA
** * *
25994 AAAGAGTAATCAGTAAAAAGTAAAATGGT
1 AAAGAGTAAAAAGTAAACAGT-AAATAGT
** * *
26023 AATTAGTAAAAAGTAAA-AGAAAAAATATT
1 AAAGAGTAAAAAGTAAACAG--TAAATAGT
** *
26052 AAAGAGTAATCAGTAAAGAGTAAATAGT
1 AAAGAGTAAAAAGTAAACAGTAAATAGT
*
26080 AAAGAGTAAAAAGTAATCAGTAAA
1 AAAGAGTAAAAAGTAAACAGTAAA
26104 GAAAAAATAG
Statistics
Matches: 61, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
28 28 0.46
29 31 0.51
30 2 0.03
ACGTcount: A:0.59, C:0.03, G:0.17, T:0.21
Consensus pattern (28 bp):
AAAGAGTAAAAAGTAAACAGTAAATAGT
Found at i:26102 original size:35 final size:34
Alignment explanation
Indices: 26051--26205 Score: 126
Period size: 35 Copynumber: 4.6 Consensus size: 34
26041 GAAAAAATAT
* *
26051 TAAAGAGTAATCAGTAAAGAGTAAATAGTAAAGAG
1 TAAAAAGTAATCAGTAAAGA-AAAATAGTAAAGAG
26086 TAAAAAGTAATCAGTAAAGAAAAAATAGT-AAGAAG
1 TAAAAAGTAATCAGTAAAG-AAAAATAGTAAAG-AG
* * * *
26121 TGAGAAGAAATCAGT-----AAAATGGTAAACGA-
1 TAAAAAGTAATCAGTAAAGAAAAATAGTAAA-GAG
* *
26150 TAAAGAGTAATCAGTAAAGAAAAATGGTAAAGAG
1 TAAAAAGTAATCAGTAAAGAAAAATAGTAAAGAG
* *
26184 TAGAATATTAATCAGTAAAGAA
1 TA-AAAAGTAATCAGTAAAGAA
26206 GTAATGGCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
29 18 0.19
30 3 0.03
31 1 0.01
33 2 0.02
34 16 0.16
35 56 0.58
36 1 0.01
ACGTcount: A:0.56, C:0.04, G:0.21, T:0.19
Consensus pattern (34 bp):
TAAAAAGTAATCAGTAAAGAAAAATAGTAAAGAG
Found at i:26115 original size:21 final size:21
Alignment explanation
Indices: 26077--26116 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26067 AAGAGTAAAT
*
26077 AGTAAAGAGTAAAAAGTAATC
1 AGTAAAGAGAAAAAAGTAATC
26098 AGTAAAGA-AAAAATAGTAA
1 AGTAAAGAGAAAAA-AGTAA
26117 GAAGTGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.62, C:0.03, G:0.17, T:0.17
Consensus pattern (21 bp):
AGTAAAGAGAAAAAAGTAATC
Found at i:29959 original size:30 final size:30
Alignment explanation
Indices: 29923--29983 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
29913 CAAAGGATCA
29923 AATGGCATCCTTGGTGCGATTCCTCCATCC
1 AATGGCATCCTTGGTGCGATTCCTCCATCC
* *
29953 AATGGCATCTTTGGTGCGATTGCTCCATCC
1 AATGGCATCCTTGGTGCGATTCCTCCATCC
29983 A
1 A
29984 TTGATGTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.18, C:0.30, G:0.21, T:0.31
Consensus pattern (30 bp):
AATGGCATCCTTGGTGCGATTCCTCCATCC
Found at i:29994 original size:30 final size:30
Alignment explanation
Indices: 29923--30002 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 30
29913 CAAAGGATCA
* *
29923 AATGGCATCCTTGGTGCGATTCCTCCATCC
1 AATGACATCTTTGGTGCGATTCCTCCATCC
* *
29953 AATGGCATCTTTGGTGCGATTGCTCCATCC
1 AATGACATCTTTGGTGCGATTCCTCCATCC
* ** *
29983 ATTGATGTCTTTTGTGCGAT
1 AATGACATCTTTGGTGCGAT
30003 CACATCTCCT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (30 bp):
AATGACATCTTTGGTGCGATTCCTCCATCC
Found at i:31509 original size:16 final size:16
Alignment explanation
Indices: 31488--31521 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
31478 TCAATGAATT
31488 CAAACTTTTTCATATA
1 CAAACTTTTTCATATA
31504 CAAACTTTTTCATATA
1 CAAACTTTTTCATATA
31520 CA
1 CA
31522 TGGGTAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (16 bp):
CAAACTTTTTCATATA
Found at i:35852 original size:9 final size:9
Alignment explanation
Indices: 35838--35862 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
35828 TGATGAGGGT
35838 ACTTGGGGC
1 ACTTGGGGC
35847 ACTTGGGGC
1 ACTTGGGGC
35856 ACTTGGG
1 ACTTGGG
35863 CTTTGATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.20, G:0.44, T:0.24
Consensus pattern (9 bp):
ACTTGGGGC
Found at i:37936 original size:15 final size:15
Alignment explanation
Indices: 37874--37929 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
37864 GATTACCATT
37874 TTACTCTTTTACTGA
1 TTACTCTTTTACTGA
*
37889 TTACTATTTT-CT--
1 TTACTCTTTTACTGA
* *
37901 TCTCCTTTTTTACTGA
1 T-TACTCTTTTACTGA
37917 TTACTCTTTTACT
1 TTACTCTTTTACT
37930 TCTTACTGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
12 1 0.03
13 7 0.22
14 4 0.12
15 19 0.59
16 1 0.03
ACGTcount: A:0.16, C:0.21, G:0.04, T:0.59
Consensus pattern (15 bp):
TTACTCTTTTACTGA
Found at i:37956 original size:21 final size:21
Alignment explanation
Indices: 37910--37994 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
37900 TTCTCCTTTT
* *
37910 TTACTGATTACTCTTTTACTTC
1 TTACTGATTACTATTTGAC-TC
37932 TTACTGATTACTATTTGACTC
1 TTACTGATTACTATTTGACTC
* *
37953 TTACTAATTACCACTTTG-CTC
1 TTACTGATTACTA-TTTGACTC
* * * *
37974 TCACTGGTTACTGTTTTACTC
1 TTACTGATTACTATTTGACTC
37995 CTAATGACTA
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 3 0.06
21 27 0.53
22 21 0.41
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.48
Consensus pattern (21 bp):
TTACTGATTACTATTTGACTC
Found at i:38026 original size:35 final size:35
Alignment explanation
Indices: 37987--38064 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
37977 CTGGTTACTG
37987 TTTTACTCCTAATGACTACCTTCTGCTGATCACTA
1 TTTTACTCCTAATGACTACCTTCTGCTGATCACTA
* ** ** * *
38022 TTTTACTCTTAATGGTTGTCTTTTGCTGATTACTA
1 TTTTACTCCTAATGACTACCTTCTGCTGATCACTA
38057 TTTTACTC
1 TTTTACTC
38065 TTTGCTGATT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.10, T:0.49
Consensus pattern (35 bp):
TTTTACTCCTAATGACTACCTTCTGCTGATCACTA
Found at i:38069 original size:22 final size:22
Alignment explanation
Indices: 38043--38110 Score: 104
Period size: 22 Copynumber: 3.1 Consensus size: 22
38033 ATGGTTGTCT
38043 TTTGCTGATTACTATTTTACTC
1 TTTGCTGATTACTATTTTACTC
38065 TTTGCTGATTACTATTTTACTC
1 TTTGCTGATTACTATTTTACTC
*
38087 TTTACTGATTA-T-TCTTTACTC
1 TTTGCTGATTACTAT-TTTACTC
38108 TTT
1 TTT
38111 ACCATTTTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 1 0.02
21 11 0.25
22 32 0.73
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.57
Consensus pattern (22 bp):
TTTGCTGATTACTATTTTACTC
Found at i:38125 original size:21 final size:22
Alignment explanation
Indices: 38057--38127 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
38047 CTGATTACTA
* * * *
38057 TTTTACTCTTTGCTGATTACTA
1 TTTTACTCTTTACTCATTATTC
*
38079 TTTTACTCTTTACTGATTATTC
1 TTTTACTCTTTACTCATTATTC
*
38101 -TTTACTCTTTAC-CATTTTTC
1 TTTTACTCTTTACTCATTATTC
38121 TTTTACT
1 TTTTACT
38128 AATTACTCTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.14
21 18 0.42
22 19 0.44
ACGTcount: A:0.17, C:0.20, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTTACTCTTTACTCATTATTC
Found at i:38301 original size:31 final size:31
Alignment explanation
Indices: 38245--38310 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
38235 AATTACTGAT
*
38245 TTACTGATTACTATTTTCACCTTGACTTTTAA
1 TTACTGATTAC-ATTTTCACCTTGACTCTTAA
*
38277 TTACTGATTA-ATTTCTTACCTTGACTCTTAA
1 TTACTGATTACATTT-TCACCTTGACTCTTAA
38308 TTA
1 TTA
38311 TCAATTTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 4 0.13
31 17 0.55
32 10 0.32
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (31 bp):
TTACTGATTACATTTTCACCTTGACTCTTAA
Found at i:38443 original size:47 final size:47
Alignment explanation
Indices: 38342--38549 Score: 328
Period size: 47 Copynumber: 4.4 Consensus size: 47
38332 TTTTACTTGA
* * *
38342 TTACTGATTTACTGATTACTATTACCTTGACTTTTGATTAATCTTTTT
1 TTACTGATTTACTGATTACCATCACCTTGAC-TTTGATTAATCTCTTT
*
38390 TTACTGATTTACTGATTACCATCACTTTGACTTTGATTAATCTCTTT
1 TTACTGATTTACTGATTACCATCACCTTGACTTTGATTAATCTCTTT
*
38437 TTACTGATTTACTGATTACCATCACTTTGACTTTGATTAATCTCTTT
1 TTACTGATTTACTGATTACCATCACCTTGACTTTGATTAATCTCTTT
* * *
38484 TTACTGATTTACTGATTACCATCACCTTGACTCTGTTTAAGCTCTTT
1 TTACTGATTTACTGATTACCATCACCTTGACTTTGATTAATCTCTTT
38531 TTACTGA-TTACTGATTACC
1 TTACTGATTTACTGATTACC
38550 CCTTTTTACT
Statistics
Matches: 152, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 12 0.08
47 112 0.74
48 28 0.18
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (47 bp):
TTACTGATTTACTGATTACCATCACCTTGACTTTGATTAATCTCTTT
Found at i:38453 original size:26 final size:26
Alignment explanation
Indices: 38423--38501 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
38413 ACTTTGACTT
38423 TGATTAATCTCTTTTTACTGATTTAC
1 TGATTAATCTCTTTTTACTGATTTAC
* *
38449 TGATTACCATCAC---TT--TGACTT--
1 TGATTA--ATCTCTTTTTACTGATTTAC
38470 TGATTAATCTCTTTTTACTGATTTAC
1 TGATTAATCTCTTTTTACTGATTTAC
38496 TGATTA
1 TGATTA
38502 CCATCACCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
19 4 0.10
21 6 0.15
22 2 0.05
23 5 0.12
24 5 0.12
25 2 0.05
26 12 0.30
28 4 0.10
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.51
Consensus pattern (26 bp):
TGATTAATCTCTTTTTACTGATTTAC
Found at i:39259 original size:50 final size:51
Alignment explanation
Indices: 39202--39456 Score: 218
Period size: 50 Copynumber: 5.1 Consensus size: 51
39192 AAGGTAACAT
* * * *
39202 TTTATTTACTAATTACT-TAAA-AGTTCAATCTTTCATTCAAAGGTTAAAGC
1 TTTATTTACCAATTACTCTAAAGA-TTCAATCTTTTATTCAAAAGTTAAATC
* ** * * * *
39252 TTTATTTACCAATCACTCTAAAGATTCAATCTTTTACCCGAACA-TGACATT
1 TTTATTTACCAATTACTCTAAAGATTCAATCTTTTATTC-AAAAGTTAAATC
* *
39303 TTTACTTACCAATTACT-TAAAAATTCAATCTTTTATTCAAAAGTTAAATC
1 TTTATTTACCAATTACTCTAAAGATTCAATCTTTTATTCAAAAGTTAAATC
* ** *** *
39353 TTTATTTACTAATTACTCTAAAGATTCAATCTTTT-CCCAAACA-TGCCATT
1 TTTATTTACCAATTACTCTAAAGATTCAATCTTTTATTCAAA-AGTTAAATC
* * *
39403 TTTGTTTACCAATTTAC-CTAAAAATTCAATCTTTTATTCAAAGGTTAAATC
1 TTTATTTACCAA-TTACTCTAAAGATTCAATCTTTTATTCAAAAGTTAAATC
39454 TTT
1 TTT
39457 TAGCAAAAGG
Statistics
Matches: 157, Mismatches: 39, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
49 3 0.02
50 86 0.55
51 65 0.41
52 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (51 bp):
TTTATTTACCAATTACTCTAAAGATTCAATCTTTTATTCAAAAGTTAAATC
Found at i:39306 original size:101 final size:100
Alignment explanation
Indices: 39201--39456 Score: 386
Period size: 101 Copynumber: 2.5 Consensus size: 100
39191 AAAGGTAACA
* * * *
39201 TTTTATTTACTAATTACTTAAAAGTTCAATCTTTCATTCAAAGGTTAAAGCTTTATTTACCAATC
1 TTTTATTTACCAATTACTTAAAAATTCAATCTTTTATTCAAAGGTTAAATCTTTATTTACCAATC
*
39266 ACTCTAAAGATTCAATCTTTTACCCGAACATGACAT
66 ACTCTAAAGATTCAATCTTTT-CCCAAACATGACAT
* * * *
39302 TTTTACTTACCAATTACTTAAAAATTCAATCTTTTATTCAAAAGTTAAATCTTTATTTACTAATT
1 TTTTATTTACCAATTACTTAAAAATTCAATCTTTTATTCAAAGGTTAAATCTTTATTTACCAATC
*
39367 ACTCTAAAGATTCAATCTTTTCCCAAACATGCCAT
66 ACTCTAAAGATTCAATCTTTTCCCAAACATGACAT
* *
39402 TTTTGTTTACCAATTTACCTAAAAATTCAATCTTTTATTCAAAGGTTAAATCTTT
1 TTTTATTTACCAA-TTACTTAAAAATTCAATCTTTTATTCAAAGGTTAAATCTTT
39457 TAGCAAAAGG
Statistics
Matches: 140, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
100 23 0.16
101 117 0.84
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (100 bp):
TTTTATTTACCAATTACTTAAAAATTCAATCTTTTATTCAAAGGTTAAATCTTTATTTACCAATC
ACTCTAAAGATTCAATCTTTTCCCAAACATGACAT
Found at i:39465 original size:20 final size:20
Alignment explanation
Indices: 39442--39480 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
39432 TCTTTTATTC
*
39442 AAAGGTTAAATCTTTTAGCA
1 AAAGGTTAAACCTTTTAGCA
*
39462 AAAGGTTACACCTTTTAGC
1 AAAGGTTAAACCTTTTAGC
39481 CAAATATCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (20 bp):
AAAGGTTAAACCTTTTAGCA
Done.