Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015544.1 Corchorus capsularis cultivar CVL-1 contig15565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14910
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31


Found at i:13585 original size:29 final size:28

Alignment explanation


    Indices: 13539--13593  Score: 67
    Period size: 27  Copynumber: 1.9  Consensus size: 28

      13529 TGTCCCTCTT

                             *            
      13539 AAAAGGAAAAAAATGAGTGTTAGTAACCTC
          1 AAAAGGAAAAAAA-G-GAGTTAGTAACCTC

                        *             
      13569 AAAA-GAAAAAAGGGAGTTAGTAACC
          1 AAAAGGAAAAAAAGGAGTTAGTAACC

      13594 CCTAAATCAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  27   11  0.48
  28    1  0.04
  29    7  0.30
  30    4  0.17

ACGTcount: A:0.53, C:0.09, G:0.22, T:0.16


Consensus pattern (28 bp):   
AAAAGGAAAAAAAGGAGTTAGTAACCTC
Done.