genome.fa.s15547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015547.1 Corchorus capsularis cultivar CVL-1 contig15568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68637

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1920--2038	61	1.9	62	94	1	213	13	16	2	67	1.34
2154--2213	26	2.3	26	88	8	86	31	28	20	20	1.97
4470--4740	91	3.0	91	98	1	519	47	15	14	23	1.81
5658--5700	21	2.0	21	86	0	59	41	18	27	11	1.85
10614--10653	21	1.9	21	89	0	62	15	22	27	35	1.94
20580--20630	4	12.8	4	100	0	102	76	23	0	0	0.79
35535--35569	14	2.6	13	91	8	61	51	22	8	17	1.72
36001--36033	2	17.0	2	87	6	50	54	0	0	45	0.99
36230--36254	13	1.9	13	100	0	50	44	0	0	56	0.99
38093--38126	17	1.9	18	88	5	52	41	2	5	50	1.42
38304--38442	38	3.7	38	81	7	167	26	17	31	24	1.97
42583--42622	16	2.5	16	83	0	53	5	15	32	47	1.66
46168--46534	195	1.9	195	97	0	689	31	27	9	31	1.89
47273--47308	2	18.5	2	94	5	65	50	0	0	50	1.00
48991--49036	23	2.0	23	95	0	83	32	21	32	13	1.92
52264--52298	16	2.2	16	100	0	70	45	17	25	11	1.81
52343--52566	91	2.5	91	95	0	394	35	13	20	31	1.91
55391--55614	91	2.5	91	87	0	331	36	13	20	30	1.91
55524--55578	26	2.1	26	82	0	65	40	12	18	29	1.87
64277--64319	22	2.0	22	86	4	61	18	4	0	76	0.95
67052--67180	50	2.6	52	82	6	167	44	7	13	34	1.72
67230--67292	33	1.9	33	93	3	110	36	3	19	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68033--68168	48	2.9	48	89	1	202	12	27	25	34	1.92
68139--68200	32	1.9	32	93	0	106	12	27	30	29	1.93
68094--68248	80	1.9	80	94	0	274	11	28	27	32	1.91
68174--68634	48	9.7	48	88	4	657	11	28	25	34	1.91
68171--68634	95	4.9	96	88	4	672	11	28	25	34	1.91
68179--68637	143	3.2	144	91	3	716	11	28	25	33	1.92

Tables:   1

The End!