genome.fa.s15549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015549.1 Corchorus capsularis cultivar CVL-1 contig15570, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89544

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172--1197	13	2.0	13	100	0	52	38	15	15	30	1.88
4182--4218	17	2.1	19	85	10	51	56	21	0	21	1.42
10464--10512	21	2.3	21	85	0	62	12	36	24	26	1.91
12597--12643	13	3.5	13	72	16	51	12	25	0	61	1.31
12704--13014	21	14.9	21	68	18	109	21	19	6	52	1.68
12801--12984	22	8.5	22	77	10	184	21	19	6	52	1.68
12795--12984	43	4.4	44	77	10	203	21	19	6	52	1.68
12960--13106	51	2.8	50	79	13	129	19	20	3	56	1.56
12968--13040	29	2.3	33	81	13	82	20	16	4	58	1.54
13045--13205	35	4.6	35	89	2	225	18	23	3	54	1.58
13181--13220	14	2.9	14	80	0	53	27	22	0	50	1.50
13653--13752	41	2.4	41	77	11	105	24	17	8	51	1.72
17058--17108	26	2.0	24	92	7	84	39	29	15	15	1.89
24165--24213	21	2.3	21	85	0	62	12	36	24	26	1.91
26156--26222	12	5.8	11	81	13	73	85	13	0	1	0.68
26163--26221	6	10.3	6	85	10	72	84	15	0	0	0.62
26158--26221	24	2.8	24	88	9	89	84	14	0	1	0.70
26157--26225	29	2.3	29	85	11	95	84	14	0	1	0.70
26233--26309	39	2.0	40	94	2	138	38	24	10	25	1.87
26315--26393	35	2.3	35	93	0	131	22	26	15	35	1.94
26415--26481	27	2.4	29	85	5	93	34	19	16	29	1.94
26557--26783	88	2.5	87	83	7	260	28	25	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28151--28226	31	2.5	31	86	2	100	31	25	15	27	1.96
28232--28287	16	3.5	16	78	9	69	30	7	23	39	1.81
28711--28753	11	3.9	11	90	0	68	46	6	4	41	1.51
28707--28753	22	2.1	22	96	0	85	46	6	4	42	1.48
29975--30071	41	2.3	41	85	5	124	40	9	11	39	1.73
31432--31471	2	19.5	2	94	5	71	47	0	2	50	1.14
34283--34340	25	2.3	25	82	5	73	22	18	0	58	1.39
34358--34411	28	1.9	28	88	0	81	11	24	1	62	1.37
34354--34418	28	2.3	28	79	10	78	12	23	1	63	1.37
34452--34533	23	3.7	23	80	8	98	19	19	3	57	1.55
34460--34811	40	8.5	42	78	12	200	19	21	4	54	1.62
34498--34886	20	19.0	20	77	8	309	18	20	5	55	1.62
34460--34881	41	10.2	40	81	7	393	18	20	5	54	1.63
39835--40193	178	2.0	178	97	1	675	37	22	12	28	1.90
41526--41554	13	2.1	14	93	6	51	41	10	27	20	1.85
45224--45301	39	2.0	39	100	0	156	35	10	23	30	1.88
51741--51776	18	2.0	18	100	0	72	16	27	0	55	1.42
63247--63294	2	24.5	2	82	4	62	47	2	4	45	1.33
71475--71680	100	2.1	100	97	2	389	33	17	13	35	1.88
72939--72998	16	3.8	16	95	0	111	43	40	13	3	1.60
72921--73012	32	2.8	32	80	4	114	35	44	16	3	1.64
73926--73960	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74659--74696	11	3.5	11	85	10	51	57	2	0	39	1.12
76927--76968	17	2.5	17	96	0	75	28	14	14	42	1.84
81797--82076	67	4.1	67	93	3	488	27	12	22	37	1.90
81959--82067	36	3.1	36	62	19	95	27	13	22	35	1.92

Tables:   1

The End!