Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015554.1 Corchorus capsularis cultivar CVL-1 contig15575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4039

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
704--763
31
1.9
31
86
0
84
51
8
16
23
1.71
796--845
19
2.5
20
80
6
66
48
6
20
26
1.72
825--923
14
7.3
14
68
5
69
51
6
23
19
1.68
849--940
27
3.4
27
95
0
166
54
3
25
17
1.58
825--954
54
2.4
53
76
10
154
53
5
22
18
1.64
903--974
34
2.1
33
82
10
83
58
4
22
15
1.54
1049--1154
22
4.8
22
83
5
124
55
7
18
17
1.65
1139--1399
54
4.8
55
84
9
349
52
7
16
24
1.69
1139--1409
108
2.5
108
92
4
431
52
7
16
23
1.68
1279--1523
122
2.0
123
97
1
465
52
7
17
22
1.69
1387--1423
14
2.6
14
100
0
74
54
5
21
18
1.64
1424--1578
55
2.8
55
89
0
231
49
8
18
23
1.74
1463--1552
29
3.2
29
63
20
73
50
10
17
22
1.76
1914--1961
23
2.1
23
84
7
62
60
2
18
18
1.46

Tables:   1

The End!