Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015557.1 Corchorus capsularis cultivar CVL-1 contig15578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24100

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1805--1853
10
4.7
10
80
16
55
59
2
0
38
1.09
1805--1854
25
2.0
25
96
0
91
60
2
0
38
1.09
1828--1861
17
2.0
17
88
0
50
64
5
0
29
1.17
5838--5955
58
2.0
59
90
3
184
27
18
21
33
1.96
15555--15610
27
2.1
27
100
0
112
57
7
28
7
1.52
15883--15926
22
2.0
22
86
8
63
40
11
4
43
1.61
16029--16419
22
17.6
22
66
14
144
36
15
9
38
1.80
16525--16771
22
11.3
22
71
10
141
32
15
10
41
1.81
16501--16691
44
4.4
44
76
4
129
34
13
9
42
1.77
16501--16666
88
1.9
88
83
2
217
33
13
10
42
1.78
20164--20242
29
2.6
28
82
11
86
26
24
12
36
1.91
20187--20244
29
2.0
29
93
0
98
22
18
15
43
1.88
20936--21017
29
2.7
30
88
5
121
37
12
23
26
1.90

Tables:   1

The End!