Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015562.1 Corchorus capsularis cultivar CVL-1 contig15583, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15535
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:6948 original size:12 final size:12

Alignment explanation


    Indices: 6933--6963  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       6923 TCGCATGCGA

                        
       6933 TGTCCGGTCATG
          1 TGTCCGGTCATG

                        
       6945 TGTCCGGTCATG
          1 TGTCCGGTCATG

                    
       6957 TG-CCGGT
          1 TGTCCGGT

       6964 GTTGCGCGGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    5  0.26
  12   14  0.74

ACGTcount: A:0.06, C:0.26, G:0.35, T:0.32


Consensus pattern (12 bp):   
TGTCCGGTCATG
Done.