Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015563.1 Corchorus capsularis cultivar CVL-1 contig15584, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22648
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31


Found at i:21026 original size:16 final size:17

Alignment explanation


    Indices: 20995--21026  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

      20985 TAATCCGCCC

                             
      20995 AACCCGCCCAAACCCGT
          1 AACCCGCCCAAACCCGT

                            
      21012 AACCCGCCC-AACCCG
          1 AACCCGCCCAAACCCG

      21027 ATTTGACTAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    6  0.40
  17    9  0.60

ACGTcount: A:0.28, C:0.56, G:0.12, T:0.03


Consensus pattern (17 bp):   
AACCCGCCCAAACCCGT
Done.