Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015566.1 Corchorus capsularis cultivar CVL-1 contig15587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55884

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4863--4923
30
2.0
30
96
0
113
18
27
19
34
1.95
6109--6144
18
2.0
18
100
0
72
38
11
11
38
1.76
7638--7668
11
2.8
11
90
0
53
35
22
9
32
1.87
7661--7700
13
3.1
13
85
0
53
25
15
15
45
1.84
11130--11159
15
2.0
15
93
0
51
43
26
10
20
1.83
13932--14111
41
4.4
41
84
2
227
34
15
16
34
1.89
13948--14102
83
1.9
81
92
5
258
35
16
16
32
1.91
19333--19391
31
1.9
31
100
0
118
23
16
5
54
1.62
19461--19508
3
16.3
3
83
12
64
62
0
0
37
0.95
19461--19508
11
4.4
11
92
5
71
62
0
0
37
0.95
22767--22801
6
5.8
6
100
0
70
34
0
14
51
1.42
30755--30805
23
2.3
23
90
6
79
13
15
11
58
1.63
32150--32216
25
2.9
25
66
34
67
52
10
7
29
1.63
43088--43127
2
19.5
2
94
5
71
50
2
0
47
1.14
43156--43220
30
2.1
31
83
8
80
32
18
4
44
1.70
43392--43535
71
2.0
71
98
0
279
36
16
7
38
1.77
43787--43861
38
2.0
38
94
0
132
37
17
10
34
1.84
43798--43881
38
2.2
38
82
8
98
39
15
14
30
1.87
46315--46363
16
3.1
16
77
16
66
16
8
6
69
1.33
46316--46363
15
3.1
15
80
14
62
16
8
6
68
1.35
47972--48023
24
2.2
24
89
0
77
30
28
7
32
1.85
51613--51643
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!