Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015571.1 Corchorus capsularis cultivar CVL-1 contig15592, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37809

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
667--852
60
3.3
57
81
13
224
39
25
12
21
1.89
751--852
30
3.4
28
75
20
91
40
28
11
19
1.87
1701--1739
19
2.1
19
85
9
53
35
28
7
28
1.85
2764--2788
2
12.5
2
100
0
50
48
0
0
52
1.00
3535--3561
2
13.5
2
100
0
54
51
48
0
0
1.00
4780--4809
2
15.5
2
93
6
53
50
0
0
50
1.00
5504--5541
5
7.8
5
88
5
60
57
2
0
39
1.12
8004--8041
18
2.1
18
100
0
76
26
10
15
47
1.78
10694--10732
6
6.5
6
87
0
60
15
5
46
33
1.68
11085--11154
30
2.4
29
87
2
95
31
12
14
41
1.83
11208--11317
55
2.0
55
94
1
195
41
8
16
33
1.78
22563--22614
23
2.3
23
93
0
86
36
7
21
34
1.82
23637--23671
18
1.9
18
88
0
52
5
11
40
42
1.65
23844--23944
40
2.5
41
77
15
111
46
0
4
47
1.30
23909--23946
20
1.9
20
88
0
58
47
2
2
47
1.30
27106--27142
17
2.1
18
90
5
58
75
0
24
0
0.80
37045--37088
14
2.9
15
83
13
54
18
27
2
52
1.57

Tables:   1

The End!