Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015573.1 Corchorus capsularis cultivar CVL-1 contig15594, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11828
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:4216 original size:2 final size:2

Alignment explanation


    Indices: 4209--4246  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       4199 TATTATACTC

                                                                    
       4209 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       4247 GCATGGTACA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:6403 original size:17 final size:17

Alignment explanation


    Indices: 6383--6416  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       6373 TATCAAAAAA

                *    *       
       6383 AAAATTTTTTAAAAAGG
          1 AAAACTTTTAAAAAAGG

                             
       6400 AAAACTTTTAAAAAAGG
          1 AAAACTTTTAAAAAAGG

       6417 GTAGTGTACC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.56, C:0.03, G:0.12, T:0.29


Consensus pattern (17 bp):   
AAAACTTTTAAAAAAGG
Done.