Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015576.1 Corchorus capsularis cultivar CVL-1 contig15597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21230

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1025--1096
26
2.7
26
79
8
83
38
20
18
22
1.93
1342--1471
56
2.3
56
88
2
181
37
19
18
24
1.94
1466--2026
58
9.4
58
78
9
418
25
23
13
36
1.92
1656--1928
62
4.5
62
78
7
206
26
23
13
36
1.91
1466--1993
118
4.4
120
76
10
351
25
23
13
37
1.92
3157--3206
26
2.0
25
88
7
75
14
18
8
60
1.58
3807--3948
33
4.3
33
93
0
230
44
16
10
28
1.81
3974--4078
33
3.2
33
80
2
131
44
19
10
25
1.82
6749--6822
31
2.3
31
86
4
94
43
22
9
24
1.83
6815--6919
33
3.2
33
82
8
124
46
20
6
25
1.75
17675--17738
27
2.4
27
97
0
119
15
14
26
43
1.85
19267--19320
24
2.2
24
77
6
56
38
22
7
31
1.82
20019--20137
36
3.4
36
80
13
158
27
19
7
45
1.77
20040--20147
32
3.2
32
80
14
137
28
17
6
47
1.72
20019--20147
68
1.9
68
91
3
215
27
18
6
46
1.75
20174--20422
37
6.9
36
82
4
225
25
22
9
42
1.83
20212--20386
75
2.4
74
84
2
228
25
22
10
41
1.85
20430--20604
11
15.6
11
72
8
129
20
18
10
50
1.75
20420--20609
57
3.6
55
76
18
215
20
17
10
52
1.73
20427--20543
44
2.6
44
89
2
162
23
17
10
48
1.78
20430--20604
34
5.2
33
76
6
154
20
18
10
50
1.75
20461--20570
23
4.9
22
77
9
89
19
17
10
52
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20528--20609
23
3.6
22
83
4
92
17
18
8
56
1.65
20514--20624
57
2.0
56
91
6
183
18
18
8
55
1.65

Tables:   1

The End!