Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015577.1 Corchorus capsularis cultivar CVL-1 contig15598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26400

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1459--1506
20
2.4
20
96
0
87
4
10
31
54
1.53
3663--3708
21
2.2
21
84
3
58
23
19
10
45
1.82
16044--16112
31
2.3
31
90
5
106
47
13
17
21
1.81
16229--16309
31
2.6
31
90
0
126
33
19
8
38
1.83
16406--16449
3
14.7
3
95
0
70
65
4
0
29
1.12
17365--17506
31
4.7
31
75
7
94
37
14
15
33
1.87
17625--17691
31
2.2
31
92
5
111
22
14
11
50
1.76
21703--21821
36
3.4
36
76
13
140
26
20
6
46
1.75
21724--21831
32
3.2
33
78
15
132
27
18
5
48
1.70
21703--21831
68
1.9
68
90
6
208
27
19
6
47
1.73
21869--22074
37
5.6
36
82
10
186
24
20
11
43
1.85
21858--22045
37
5.1
38
85
3
206
23
20
10
45
1.82
21896--22067
75
2.3
74
84
3
213
25
20
11
43
1.84
21858--22067
110
1.9
109
80
5
244
24
20
10
44
1.82
22114--22210
11
8.6
11
72
3
77
21
19
9
49
1.76
22111--22226
45
2.6
45
84
0
151
20
18
7
52
1.70
22145--22237
23
4.1
23
81
2
107
18
18
7
55
1.65

Tables:   1

The End!