genome.fa.s15578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015578.1 Corchorus capsularis cultivar CVL-1 contig15599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51889

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1382--1413	16	1.9	17	93	6	57	31	0	9	59	1.29
4285--4332	12	4.1	12	81	2	53	85	0	12	2	0.69
4285--4332	20	2.4	20	79	6	62	85	0	12	2	0.69
4269--4326	27	2.1	29	84	12	79	79	0	15	5	0.90
4392--4448	14	4.3	13	82	10	71	36	7	14	42	1.72
6296--6776	70	7.0	70	84	4	624	21	19	21	37	1.95
6364--6767	200	2.0	200	90	0	628	20	20	22	36	1.95
6255--6776	270	1.9	269	90	0	837	20	20	21	37	1.94
6834--7198	159	2.2	163	83	5	450	28	18	16	35	1.94
7225--7263	20	2.0	20	89	0	60	25	25	20	28	1.99
7267--7294	14	2.0	14	100	0	56	35	14	14	35	1.86
7381--7742	38	9.8	37	75	7	315	29	11	11	46	1.76
7384--7745	76	4.9	76	84	6	456	30	11	11	46	1.76
7570--7672	30	3.2	30	71	19	89	27	13	13	45	1.81
7568--7710	68	2.1	68	93	0	250	29	12	13	44	1.80
7765--7845	33	2.6	31	77	13	85	23	12	18	45	1.83
8035--8088	26	2.1	26	85	0	72	24	12	18	44	1.85
8355--8850	63	7.9	63	82	5	567	23	20	15	40	1.91
8355--8831	190	2.5	191	87	4	700	23	20	16	40	1.91
9074--9147	27	2.7	27	95	0	130	17	12	25	44	1.83
13298--13376	33	2.4	33	83	8	99	15	46	27	10	1.77
22390--22467	36	2.2	36	88	0	111	43	21	11	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22481--22873	8	48.1	8	69	9	186	44	7	21	26	1.78
22464--22873	24	16.4	24	72	12	218	44	7	21	26	1.78
22521--22847	124	2.6	127	89	4	473	44	7	21	25	1.79
22885--23231	44	7.5	44	87	7	392	46	7	18	27	1.76
26820--26856	14	2.8	13	88	8	56	35	10	8	45	1.69
31681--31802	33	3.7	33	78	10	117	24	39	27	8	1.84
39176--39241	30	2.2	30	86	5	89	22	37	30	9	1.85
41422--41471	25	2.0	25	100	0	100	24	24	8	44	1.80
42846--43009	16	10.5	16	74	9	133	9	20	35	34	1.86
42844--42963	32	3.8	32	82	4	154	9	20	35	34	1.85
42844--42978	32	4.2	32	80	3	148	8	21	35	34	1.85
43766--43900	16	8.4	16	79	3	128	10	22	35	31	1.88
43782--43876	9	11.8	8	68	21	56	11	23	34	30	1.90
43764--43900	32	4.3	32	80	1	150	10	23	35	31	1.88
43764--43900	48	2.9	47	82	8	161	10	23	35	31	1.88
45124--45177	5	11.0	5	76	11	58	22	0	3	74	0.98
45334--45412	31	2.6	32	84	11	103	36	17	17	27	1.93
49528--49593	30	2.2	30	86	5	89	22	37	30	9	1.85
51789--51838	25	2.0	25	100	0	100	24	24	8	44	1.80

Tables:   1

The End!