Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015589.1 Corchorus capsularis cultivar CVL-1 contig15610, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43950

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1695--1764
28
2.5
28
93
2
115
45
21
17
15
1.85
4010--4059
25
2.0
25
96
0
91
62
16
14
8
1.54
5018--5150
50
2.7
48
81
9
160
11
12
27
49
1.73
5033--5148
50
2.4
50
89
2
173
10
9
27
52
1.66
6268--6335
33
2.1
33
97
0
127
29
14
19
36
1.91
7387--7432
6
7.5
6
77
22
51
34
45
17
2
1.61
7397--7430
16
2.0
17
88
11
52
26
52
17
2
1.58
7463--7518
16
3.5
16
80
4
60
39
41
12
7
1.70
8647--8685
20
1.9
20
89
5
60
58
7
2
30
1.39
9672--9727
23
2.4
23
81
0
67
30
48
19
1
1.59
9672--9760
40
2.3
38
79
11
99
33
47
16
2
1.60
9672--9761
6
15.8
6
71
17
50
34
46
16
2
1.60
9715--9761
16
2.8
17
80
6
60
40
44
12
2
1.54
14917--15024
33
3.3
33
82
2
128
27
12
18
40
1.87
15075--15146
33
2.2
33
89
0
108
26
8
19
45
1.78
19350--19380
13
2.4
13
100
0
62
45
0
0
54
0.99
19384--19443
29
2.1
29
90
0
93
28
3
23
45
1.69
21195--21228
17
2.0
17
100
0
68
29
11
17
41
1.85
24181--24214
11
3.0
11
95
4
59
44
17
0
38
1.49
24407--24520
57
2.0
57
100
0
228
43
7
19
29
1.77
28727--28906
22
8.2
21
71
10
110
42
11
12
34
1.78
28720--28839
44
2.7
43
79
12
127
41
11
11
35
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28757--28905
44
3.4
44
77
5
122
42
12
10
34
1.77
28736--28905
66
2.6
65
80
9
166
41
11
11
35
1.77
28931--29278
22
15.6
22
70
13
133
34
9
18
37
1.83
29043--29100
19
2.8
20
84
7
73
32
6
18
41
1.78
29159--29280
46
2.7
44
80
9
131
35
13
15
36
1.86
29174--29301
68
1.9
67
82
7
161
33
10
17
38
1.84
29036--29280
22
11.1
22
72
13
157
33
10
17
38
1.84
29045--29280
90
2.7
88
75
11
236
33
10
16
39
1.83
30292--30355
21
3.0
21
81
0
83
34
14
17
34
1.89
31810--31872
30
2.1
30
94
5
110
19
34
17
28
1.94
30905--32844
980
2.0
986
89
3
3007
33
23
15
27
1.95
38166--38202
2
18.5
2
94
0
65
48
2
0
48
1.15
38341--38383
11
3.9
11
90
0
68
46
6
4
41
1.51
38337--38383
22
2.1
22
96
0
85
46
6
4
42
1.48
40011--40099
42
2.1
42
93
0
151
14
31
10
43
1.79

Tables:   1

The End!