Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015590.1 Corchorus capsularis cultivar CVL-1 contig15611, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9030
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31


Found at i:7838 original size:15 final size:15

Alignment explanation


    Indices: 7820--7850  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       7810 TTACTTTTGC

                    *      
       7820 TACTTTTATCATTTT
          1 TACTTTTACCATTTT

                           
       7835 TACTTTTACCATTTT
          1 TACTTTTACCATTTT

             
       7850 T
          1 T

       7851 CTTACTCTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.19, C:0.16, G:0.00, T:0.65


Consensus pattern (15 bp):   
TACTTTTACCATTTT

Found at i:7850 original size:24 final size:24

Alignment explanation


    Indices: 7805--7850  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       7795 TACTGATTAC

                         * *        
       7805 CATTTTTACTTTTGCTACTTTTAT
          1 CATTTTTACTTTTACCACTTTTAT

                             *    
       7829 CATTTTTACTTTTACCATTTTT
          1 CATTTTTACTTTTACCACTTTT

       7851 CTTACTCTTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.17, C:0.17, G:0.02, T:0.63


Consensus pattern (24 bp):   
CATTTTTACTTTTACCACTTTTAT
Done.