Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015591.1 Corchorus capsularis cultivar CVL-1 contig15612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38398

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
282--379
21
4.5
21
72
7
79
14
57
5
23
1.57
276--406
66
2.0
67
83
4
167
13
55
5
25
1.59
397--459
21
3.0
22
74
6
67
15
52
7
23
1.69
288--340
24
2.2
24
79
0
61
15
60
5
18
1.54
315--472
42
3.6
42
70
14
113
14
55
6
23
1.62
420--585
21
7.6
21
71
15
97
21
55
5
17
1.62
420--585
66
2.5
64
78
7
161
21
55
5
17
1.62
462--571
45
2.4
45
83
3
132
21
55
5
17
1.62
483--577
24
4.1
24
77
8
97
22
56
5
15
1.59
2190--2242
27
1.9
27
88
3
79
52
9
28
9
1.64
6636--6689
28
1.9
28
85
7
74
33
12
18
35
1.89
6563--6774
113
1.9
110
86
6
302
33
9
19
37
1.84
6663--6787
43
2.9
42
80
16
141
32
8
19
40
1.80
6892--6979
43
2.1
42
85
6
115
40
4
15
38
1.68
7049--7591
37
14.7
37
80
7
586
44
16
16
22
1.86
7034--7591
74
7.5
74
93
0
909
44
17
16
21
1.86
7781--7808
6
4.7
6
100
0
56
35
0
17
46
1.49
8658--8726
8
8.2
8
74
13
59
2
14
1
81
0.88
8658--8721
15
4.3
15
78
18
71
3
15
1
79
0.93
10759--10870
50
2.2
50
100
0
224
33
12
9
43
1.75
29524--29571
19
2.4
21
86
6
64
10
31
35
22
1.88
30690--30787
42
2.4
42
83
8
121
8
29
36
25
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36083--36132
18
2.7
19
78
12
59
28
2
32
38
1.68
37775--37800
13
2.0
13
100
0
52
23
38
15
23
1.92

Tables:   1

The End!