Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015598.1 Corchorus capsularis cultivar CVL-1 contig15619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4744
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:1559 original size:20 final size:20

Alignment explanation


    Indices: 1534--1572  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1524 AAAAAGAGCA

                  *             
       1534 CCAATTTGCAAATCAAATGT
          1 CCAATTCGCAAATCAAATGT

                    *          
       1554 CCAATTCGTAAATCAAATG
          1 CCAATTCGCAAATCAAATG

       1573 CCCAGCACGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28


Consensus pattern (20 bp):   
CCAATTCGCAAATCAAATGT
Done.