Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000156.1 Corchorus capsularis cultivar CVL-1 contig00156, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38


Found at i:421 original size:20 final size:20

Alignment explanation


    Indices: 396--457  Score: 81
    Period size: 20  Copynumber: 3.0  Consensus size: 20

        386 TCTTAAGTTC

                  *             
        396 TACTCTTACGAAATGTGAGT
          1 TACTCTCACGAAATGTGAGT

                                 
        416 TACTCTCAC-AGAATGTGAGT
          1 TACTCTCACGA-AATGTGAGT

                         *       
        436 TACTCTCACGGAATTGTGAGT
          1 TACTCTCAC-GAAATGTGAGT

             
        457 T
          1 T

        458 TTCTTTGTAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 5
        0.84            0.05        0.11

Matches are distributed among these distances:
  19    1  0.03
  20   26  0.70
  21    9  0.24
  22    1  0.03

ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Consensus pattern (20 bp):   
TACTCTCACGAAATGTGAGT
Done.