Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015602.1 Corchorus capsularis cultivar CVL-1 contig15623, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5376
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:1135 original size:31 final size:31

Alignment explanation


    Indices: 1100--1161  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1090 AAAGTCATTA

                       *                   
       1100 ATGAATATTGTGATTATTCATGAATCAAGAG
          1 ATGAATATTGTAATTATTCATGAATCAAGAG

                                           
       1131 ATGAATATTGTAATTATTCATGAATCAAGAG
          1 ATGAATATTGTAATTATTCATGAATCAAGAG

       1162 TTCTCTTGTG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.40, C:0.06, G:0.18, T:0.35


Consensus pattern (31 bp):   
ATGAATATTGTAATTATTCATGAATCAAGAG
Done.