Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015608.1 Corchorus capsularis cultivar CVL-1 contig15629, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2270
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35


Found at i:1461 original size:3 final size:3

Alignment explanation


    Indices: 1453--1497  Score: 90
    Period size: 3  Copynumber: 15.0  Consensus size: 3

       1443 ACTATTCCAA

                                                                       
       1453 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

       1498 AAACTTTTAT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   42  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TAT

Done.