genome.fa.s15614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015614.1 Corchorus capsularis cultivar CVL-1 contig15635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109485

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2885--2909	13	1.9	13	100	0	50	48	16	24	12	1.79
3077--3151	27	2.8	27	89	0	105	40	26	16	17	1.90
7650--7683	11	3.2	10	84	15	50	29	2	17	50	1.61
23643--23722	30	2.7	30	86	0	106	17	23	22	36	1.95
26087--26149	30	2.1	30	88	5	92	25	17	33	23	1.96
26649--26707	8	6.9	8	74	25	50	27	3	23	45	1.68
31757--31791	16	2.2	16	100	0	70	45	17	25	11	1.81
32090--32125	19	1.9	18	88	5	54	41	22	11	25	1.86
42533--42605	36	2.0	36	81	5	85	57	5	10	26	1.54
45641--45720	23	3.3	23	65	19	63	18	30	12	38	1.88
45618--45725	50	2.2	50	94	0	189	24	29	12	34	1.91
56487--56758	51	5.4	51	82	2	332	42	7	14	34	1.75
56487--56802	153	2.1	152	84	6	408	42	7	15	34	1.76
57382--57475	47	2.0	47	91	4	154	17	22	19	41	1.90
57445--57658	41	5.2	41	87	3	290	12	31	19	37	1.88
57641--57783	49	3.0	49	79	4	166	13	22	22	41	1.88
65206--65279	31	2.4	31	79	2	78	28	16	18	36	1.93
69544--69667	41	3.0	41	84	1	160	14	31	15	38	1.87
69725--69944	110	2.0	110	94	0	386	41	14	14	29	1.86
71180--71225	15	3.1	15	75	18	51	4	15	4	76	1.11
75375--75413	21	1.9	21	84	5	53	61	5	12	20	1.50
75451--75796	136	2.5	135	95	2	622	29	11	22	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82634--82660	6	4.5	6	100	0	54	29	0	14	55	1.40
84612--84669	21	2.8	21	75	15	57	36	3	0	60	1.14
93562--93620	23	2.5	24	82	17	72	8	30	44	16	1.78
93605--93711	33	3.2	33	94	2	171	14	29	35	20	1.92
93586--93711	66	1.9	66	85	3	173	13	30	36	19	1.91
94642--94689	17	2.8	17	78	9	53	72	6	10	10	1.26
96343--96391	21	2.3	21	85	0	62	10	34	26	28	1.89
107544--107577	11	3.2	10	84	15	50	50	17	2	29	1.61
109339--109399	32	1.9	32	83	6	79	52	3	18	26	1.60

Tables:   1

The End!