Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015616.1 Corchorus capsularis cultivar CVL-1 contig15637, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4563
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:149 original size:17 final size:19

Alignment explanation


    Indices: 117--151  Score: 56
    Period size: 17  Copynumber: 1.9  Consensus size: 19

        107 TCATGGGCCT

                               
        117 TTATTCTATCTTAGTTTAA
          1 TTATTCTATCTTAGTTTAA

                              
        136 TTATT-TAT-TTAGTTTA
          1 TTATTCTATCTTAGTTTA

        152 GAAGACATTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    8  0.50
  18    3  0.19
  19    5  0.31

ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63


Consensus pattern (19 bp):   
TTATTCTATCTTAGTTTAA
Done.