Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015619.1 Corchorus capsularis cultivar CVL-1 contig15640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114909

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12727--12758
16
2.0
16
100
0
64
18
12
6
62
1.50
15865--15934
19
3.6
19
69
17
54
35
15
2
45
1.61
15864--15940
39
2.0
39
94
0
136
37
15
3
42
1.65
26557--26594
19
2.0
20
90
10
62
26
31
5
36
1.79
37754--37800
11
4.1
12
84
13
55
57
0
0
42
0.98
37759--37799
20
2.0
20
90
9
64
60
0
0
39
0.96
38826--38917
28
3.0
32
68
12
102
30
21
18
29
1.97
41192--41249
25
2.3
25
93
0
98
15
25
29
29
1.96
47768--47793
10
2.6
10
100
0
52
50
19
7
23
1.73
49930--49969
20
2.0
20
95
0
71
35
15
17
32
1.91
57187--57314
31
4.4
29
75
19
117
35
28
21
15
1.94
57191--57292
53
1.9
53
89
0
159
38
27
19
14
1.91
57243--57332
31
2.9
31
81
0
108
35
25
20
18
1.95
58474--58535
25
2.4
25
75
25
58
54
0
6
38
1.26
63741--63788
23
2.1
23
84
0
60
43
6
4
45
1.48
64914--64964
24
2.1
24
96
0
93
45
9
21
23
1.82
73795--73825
14
2.2
14
100
0
62
22
12
41
22
1.88
82676--82709
5
6.8
5
93
0
50
0
11
2
85
0.71
97921--97947
2
13.5
2
100
0
54
51
0
0
48
1.00
113569--113597
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!