Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015620.1 Corchorus capsularis cultivar CVL-1 contig15641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59611

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1734--1805
37
1.9
37
94
0
126
30
19
19
30
1.96
9468--9517
3
16.7
3
82
0
64
2
38
2
58
1.21
9462--9555
12
7.3
12
71
16
64
2
39
4
54
1.32
9468--9526
15
3.9
15
84
8
66
1
38
3
55
1.26
17428--17471
21
2.1
21
82
0
52
20
2
4
72
1.13
17808--17880
36
2.0
36
97
0
137
28
13
31
26
1.94
18710--18764
6
9.2
6
95
0
74
41
23
16
18
1.89
18710--18764
18
3.1
18
89
0
83
41
23
16
18
1.89
19708--19786
37
2.1
38
90
2
124
25
16
17
40
1.90
27176--27218
20
2.1
21
91
4
70
25
9
34
30
1.87
38502--38536
2
17.5
2
100
0
70
48
0
0
51
1.00
41695--41840
30
5.0
29
78
3
159
63
6
16
13
1.48
41695--41836
59
2.4
59
92
1
239
63
6
16
13
1.49
45951--45987
1
37.0
1
100
0
74
100
0
0
0
0.00
48102--48184
42
2.0
42
90
0
130
28
18
25
27
1.98
48752--49187
166
2.6
167
82
1
516
30
14
13
41
1.85
55779--55808
12
2.6
11
90
10
51
10
0
0
90
0.47
59398--59448
17
3.1
17
75
10
52
39
1
5
52
1.37
59421--59470
25
2.0
24
85
11
66
30
2
6
62
1.31

Tables:   1

The End!