Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015622.1 Corchorus capsularis cultivar CVL-1 contig15643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75791

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2199--2238
20
2.0
20
85
0
53
15
20
20
45
1.86
4028--4106
31
2.5
31
79
4
88
17
26
25
30
1.97
6913--6978
31
2.1
31
86
5
89
27
18
4
50
1.66
6919--6985
31
2.1
31
83
8
82
31
14
4
49
1.64
7316--7353
19
2.0
20
85
15
53
28
5
2
63
1.30
7479--7532
22
2.4
22
75
6
54
33
9
16
40
1.80
7643--7708
22
3.0
22
80
6
73
36
6
19
37
1.77
7714--7877
22
7.3
22
71
13
102
41
10
15
32
1.81
7982--8540
22
25.6
22
68
14
178
39
9
14
36
1.80
7982--8426
44
10.2
44
71
13
219
38
9
14
37
1.79
8171--8273
23
4.6
23
81
3
102
36
7
14
40
1.75
9283--9324
2
21.0
2
100
0
84
50
0
0
50
1.00
9764--9801
19
2.0
19
100
0
76
10
31
5
52
1.58
16699--16749
26
2.0
26
84
0
66
49
3
21
25
1.67
17349--17418
34
2.1
34
100
0
140
48
5
8
37
1.58
17894--19133
199
6.2
199
86
2
1677
33
12
18
35
1.89
21213--21245
13
2.4
14
90
5
50
42
9
3
45
1.51
22647--22685
6
6.5
6
90
0
60
2
20
15
61
1.45
22972--23001
6
5.0
6
91
0
51
16
30
33
20
1.94
32354--32713
179
2.0
179
93
0
612
42
7
14
35
1.75
45302--45346
12
3.5
13
81
9
56
57
11
0
31
1.33
46767--46792
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50683--50727
2
22.5
2
90
0
72
44
0
0
55
0.99
52147--52282
31
4.4
31
81
0
155
19
25
23
30
1.98
52944--52989
22
2.1
22
87
0
65
50
6
13
30
1.66
52939--52990
22
2.5
21
78
9
61
46
7
11
34
1.69
53456--53480
11
2.3
11
100
0
50
68
8
0
24
1.16
54001--54050
25
1.9
26
88
8
75
58
10
14
18
1.63
54100--54150
24
2.2
24
96
3
95
47
1
15
35
1.57
55009--55190
31
5.9
31
90
1
240
20
23
20
34
1.97
55414--55457
2
21.0
2
90
9
70
47
4
0
47
1.22
55411--55455
9
5.2
9
97
2
76
46
6
0
46
1.29
55482--55537
30
2.0
28
83
13
71
39
1
14
44
1.55
55741--55796
2
28.0
2
100
0
112
50
50
0
0
1.00
57433--57822
139
2.8
138
84
6
487
44
8
11
35
1.72
58114--58446
142
2.4
142
90
4
532
42
9
9
37
1.71
58770--58828
30
2.0
30
90
6
93
35
3
15
45
1.63
59682--59708
4
6.8
4
100
0
54
25
0
0
74
0.83
60726--61053
140
2.3
140
92
0
541
42
10
9
37
1.72

Tables:   1

The End!