Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015627.1 Corchorus capsularis cultivar CVL-1 contig15648, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6132
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:5686 original size:12 final size:11

Alignment explanation


    Indices: 5667--5696  Score: 51
    Period size: 12  Copynumber: 2.6  Consensus size: 11

       5657 TTCTTTTTTC

                       
       5667 TTTTTATTTAT
          1 TTTTTATTTAT

                        
       5678 TTATTTATTTAT
          1 TT-TTTATTTAT

                   
       5690 TTTTTAT
          1 TTTTTAT

       5697 CCCAACTCAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  11    7  0.39
  12   11  0.61

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (11 bp):   
TTTTTATTTAT
Done.