genome.fa.s15631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015631.1 Corchorus capsularis cultivar CVL-1 contig15652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64369

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--332	60	5.5	60	91	2	504	32	18	15	33	1.92
3808--3845	17	2.3	17	81	4	51	47	26	10	15	1.78
4124--4170	23	2.0	23	91	0	76	12	25	36	25	1.92
10689--10733	23	2.0	23	95	0	81	13	31	33	22	1.92
14511--14677	85	2.0	85	89	0	253	35	13	17	33	1.88
14901--15034	67	2.0	67	100	0	268	50	11	10	26	1.71
18737--18855	36	3.4	35	82	13	156	28	18	6	46	1.74
18758--18865	32	3.2	32	80	14	137	28	17	6	47	1.72
18737--18865	68	1.9	68	91	3	215	28	17	6	47	1.72
18869--19251	36	10.7	36	89	1	527	23	21	10	44	1.83
18869--19250	108	3.5	108	91	2	590	23	21	10	44	1.83
19245--19404	11	14.5	11	85	2	142	23	20	10	46	1.80
19245--19406	33	4.9	33	89	0	216	24	20	9	45	1.81
19548--19643	42	2.3	42	94	1	167	26	20	10	42	1.84
23361--23429	22	3.1	22	85	2	93	27	26	21	24	1.99
27332--27402	33	2.2	33	84	0	88	23	9	22	43	1.83
27431--27569	33	4.2	33	93	1	244	31	8	17	42	1.79
27431--27569	65	2.1	66	94	1	244	31	8	17	42	1.79
30092--30125	15	2.2	16	89	5	52	55	11	2	29	1.50
30322--30363	20	2.1	21	86	8	61	57	7	7	28	1.52
36416--36476	30	2.0	30	87	6	88	31	19	11	37	1.87
38680--38704	13	1.9	13	100	0	50	8	0	88	4	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44639--44674	2	18.0	2	94	0	63	47	0	2	50	1.15
47594--47632	21	1.9	21	89	5	62	23	30	5	41	1.76
47703--47761	25	2.4	25	88	5	86	35	22	0	42	1.54
47771--47838	26	2.6	26	92	0	109	52	10	1	35	1.44
47771--47814	15	3.2	15	75	24	60	52	11	0	36	1.38
53561--53604	16	2.8	16	83	10	56	54	18	9	18	1.69
56595--56636	19	2.2	19	95	0	75	16	14	7	61	1.53
58305--58351	10	4.8	10	84	12	53	34	21	2	42	1.65
58293--58351	18	2.9	21	75	17	61	35	18	3	42	1.67
60626--60697	28	2.6	28	84	4	83	18	8	26	47	1.76
61047--61076	12	2.6	11	94	5	51	0	10	0	90	0.47
61777--61806	2	15.0	2	100	0	60	50	0	0	50	1.00
64138--64203	11	6.0	11	89	0	96	50	7	1	40	1.40
64134--64202	22	3.1	22	95	0	120	49	7	1	42	1.39
64138--64203	33	2.0	33	91	5	107	50	7	1	40	1.40

Tables:   1

The End!