Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015633.1 Corchorus capsularis cultivar CVL-1 contig15654, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40027

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11111--11140
14
2.1
14
93
0
51
66
0
0
33
0.92
13243--13288
12
3.5
13
79
8
58
63
0
4
32
1.14
13432--13604
93
1.9
93
96
0
319
51
2
13
32
1.54
14728--14870
73
2.0
72
93
5
247
45
9
9
35
1.69
15332--15387
19
2.9
19
91
0
94
16
33
14
35
1.88
15438--15495
19
2.9
19
87
5
80
29
22
12
36
1.90
15887--15947
31
2.0
31
90
0
95
44
19
16
19
1.87
15884--16199
103
3.1
103
99
0
614
43
18
15
22
1.88
16890--16922
2
16.5
2
100
0
66
51
0
0
48
1.00
17840--17960
61
2.0
61
85
0
161
42
13
10
33
1.79
27559--27588
12
2.5
12
94
0
51
3
26
0
70
1.03
27607--27672
33
2.0
33
96
0
123
6
34
3
56
1.40
27607--27657
15
3.2
15
70
24
50
5
37
1
54
1.36
30592--30649
27
2.2
25
82
11
64
84
6
5
3
0.86
30592--30649
24
2.5
24
80
2
64
84
6
5
3
0.86
32039--32767
49
14.9
49
84
4
749
24
30
13
31
1.94
34451--34501
22
2.3
22
100
0
102
31
37
9
21
1.86
36698--36738
10
4.2
10
84
6
57
7
12
31
48
1.68
37053--37082
14
2.1
14
93
0
51
0
16
43
40
1.48
37592--37621
10
3.0
10
100
0
60
30
50
20
0
1.49
39636--39674
6
6.5
6
100
0
78
30
0
15
53
1.42

Tables:   1

The End!