Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001564.1 Corchorus capsularis cultivar CVL-1 contig01564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4334
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:1998 original size:13 final size:13

Alignment explanation


    Indices: 1980--2006  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1970 AACCAACCAA

                         
       1980 CATTCATATATAC
          1 CATTCATATATAC

                         
       1993 CATTCATATATAC
          1 CATTCATATATAC

             
       2006 C
          1 C

       2007 GACTCAAGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37


Consensus pattern (13 bp):   
CATTCATATATAC
Done.