Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015644.1 Corchorus capsularis cultivar CVL-1 contig15665, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2389
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:882 original size:33 final size:33

Alignment explanation


    Indices: 834--924  Score: 103
    Period size: 33  Copynumber: 2.7  Consensus size: 33

        824 CCGCGCAACA

                                               *
        834 CCGGCCACAAGACCGGCCACGCGACAT-GGACATGT
          1 CCGGCCAC-A-ACCGGCCACGCGAC-TCGGACATGC

                 *           **        *     
        869 CCGGCTACAACCGGCCAAACGACTCGGCCATGC
          1 CCGGCCACAACCGGCCACGCGACTCGGACATGC

                                   
        902 CCGGCCACAACCGGCCACGCGAC
          1 CCGGCCACAACCGGCCACGCGAC

        925 CCTTTGTCTA


Statistics
Matches: 47,  Mismatches: 8, Indels: 4
        0.80            0.14        0.07

Matches are distributed among these distances:
  32    1  0.02
  33   38  0.81
  34    1  0.02
  35    7  0.15

ACGTcount: A:0.24, C:0.43, G:0.26, T:0.07


Consensus pattern (33 bp):   
CCGGCCACAACCGGCCACGCGACTCGGACATGC
Done.