Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015645.1 Corchorus capsularis cultivar CVL-1 contig15666, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5373
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31


Found at i:4104 original size:28 final size:28

Alignment explanation


    Indices: 4073--4147  Score: 105
    Period size: 28  Copynumber: 2.7  Consensus size: 28

       4063 GGGTAATCCA

                                        
       4073 GGGGCATTTTGGTCATTTTCACATCTAG
          1 GGGGCATTTTGGTCATTTTCACATCTAG

                               **   *   
       4101 GGGGCATTTTGGTCATTTTTGCATTTAG
          1 GGGGCATTTTGGTCATTTTCACATCTAG

                *  *           
       4129 GGGGTATCTTGGTCATTTT
          1 GGGGCATTTTGGTCATTTT

       4148 AAGTCTACTT


Statistics
Matches: 42,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  28   42  1.00

ACGTcount: A:0.15, C:0.13, G:0.28, T:0.44


Consensus pattern (28 bp):   
GGGGCATTTTGGTCATTTTCACATCTAG

Found at i:4281 original size:29 final size:29

Alignment explanation


    Indices: 4245--4302  Score: 98
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       4235 TATTTTTACA

                             *           
       4245 TATTTTACGTCTTGGCTTAATTTAACATT
          1 TATTTTACGTCTTGGCTAAATTTAACATT

                                    *    
       4274 TATTTTACGTCTTGGCTAAATTTAGCATT
          1 TATTTTACGTCTTGGCTAAATTTAACATT

       4303 GCTGCATTTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.24, C:0.14, G:0.12, T:0.50


Consensus pattern (29 bp):   
TATTTTACGTCTTGGCTAAATTTAACATT
Done.