genome.fa.s15646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015646.1 Corchorus capsularis cultivar CVL-1 contig15667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89990

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567--646	33	2.4	33	81	4	99	23	42	26	7	1.80
2557--2642	25	3.2	25	65	24	59	52	4	17	25	1.64
2525--2686	54	3.0	55	91	1	272	49	6	17	27	1.70
2625--2825	71	2.8	71	91	0	332	48	7	18	25	1.74
2776--2880	55	1.9	55	96	0	192	48	5	17	28	1.69
2703--2951	126	2.0	126	92	0	417	48	7	18	25	1.73
2571--3178	197	3.1	197	91	0	932	48	6	18	26	1.72
2797--2886	26	3.3	26	67	19	76	51	5	15	27	1.66
2877--2995	37	3.3	36	67	23	97	47	7	19	25	1.75
2734--3121	126	3.1	124	81	10	400	48	6	18	26	1.73
2969--3079	55	2.0	55	91	0	177	47	8	19	24	1.76
2829--3025	71	2.8	70	92	1	331	49	7	18	25	1.72
3024--3194	71	2.4	71	84	2	216	47	5	19	27	1.72
3036--3167	34	3.8	34	75	13	124	47	5	17	29	1.69
3441--3480	19	2.0	20	85	4	55	65	0	22	12	1.26
3460--3619	28	5.8	28	70	22	90	54	3	21	20	1.58
6290--6349	15	4.3	14	77	12	61	43	6	11	38	1.68
6289--6350	14	4.4	14	76	11	63	41	6	11	40	1.66
9758--9832	28	2.7	28	91	0	114	14	12	28	45	1.80
9930--9987	29	2.0	29	100	0	116	20	13	13	51	1.75
13114--13218	55	1.9	55	96	0	192	48	5	18	27	1.70
13135--13224	26	3.3	26	67	19	76	51	5	16	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13165--13363	71	2.8	71	90	0	326	48	7	19	25	1.74
13215--13333	37	3.3	36	70	23	106	46	7	21	25	1.77
13114--13489	126	3.0	126	81	9	369	47	6	18	26	1.74
13307--13417	55	2.0	55	91	0	177	47	8	19	24	1.76
13109--13493	197	2.0	197	88	0	572	48	6	18	25	1.73
13374--13499	34	3.6	33	75	15	112	49	6	15	28	1.69
13934--14024	45	2.0	46	89	4	139	57	1	25	16	1.46
13982--14147	27	6.0	28	70	18	98	54	3	21	20	1.57
13983--14147	25	6.1	27	70	18	94	54	3	21	20	1.58
14702--14776	33	2.3	33	95	0	132	22	46	22	8	1.78
20243--20330	33	2.7	33	87	3	133	22	45	23	7	1.79
38315--38348	15	2.3	15	89	0	50	64	2	20	11	1.39
40066--40718	36	18.7	36	83	8	736	39	10	18	32	1.84
40066--40718	143	4.7	143	85	6	819	39	10	18	32	1.84
47704--47767	32	2.0	32	81	6	76	25	21	12	40	1.88
49235--49268	15	2.3	15	89	0	50	64	2	20	11	1.39
50978--51635	36	18.7	36	84	8	801	39	10	17	32	1.84
50978--51635	143	4.7	142	87	6	875	39	10	17	32	1.84
55625--55692	34	2.1	34	83	5	86	32	1	11	54	1.46
56084--56121	15	2.4	16	78	4	51	44	2	7	44	1.47
60037--60549	35	14.9	35	80	9	506	32	18	9	39	1.83
60037--60546	205	2.5	204	84	6	606	32	18	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60035--60559	170	3.1	170	81	9	536	32	18	9	39	1.83
66938--66982	23	2.0	22	82	4	54	11	22	42	24	1.86
66927--67067	33	4.3	33	82	4	151	9	25	41	23	1.84
71888--71922	12	3.0	12	95	4	63	31	34	17	17	1.93
73492--73549	10	5.5	10	76	11	53	8	25	43	22	1.82
73487--73611	33	3.8	33	87	4	137	8	24	42	24	1.83
73491--73631	33	4.3	33	81	8	135	8	24	42	24	1.82
73492--73631	66	2.1	66	80	5	149	8	25	42	24	1.83
87669--88007	50	6.9	49	79	7	330	22	27	17	31	1.97
87669--88020	99	3.6	99	80	9	369	22	27	17	32	1.97

Tables:   1

The End!