Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015649.1 Corchorus capsularis cultivar CVL-1 contig15670, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5724
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:4344 original size:13 final size:13

Alignment explanation


    Indices: 4326--4351  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       4316 CTGAGATGTT

                         
       4326 CCTTTGTTATCTA
          1 CCTTTGTTATCTA

                         
       4339 CCTTTGTTATCTA
          1 CCTTTGTTATCTA

       4352 TCCACATCTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54


Consensus pattern (13 bp):   
CCTTTGTTATCTA

Found at i:5664 original size:20 final size:20

Alignment explanation


    Indices: 5639--5679  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       5629 CGTTTTGGGC

                                
       5639 TTTAAACTTGGGCTTTCGGG
          1 TTTAAACTTGGGCTTTCGGG

                            *   
       5659 TTTAAACTTGGGCTTTTGGG
          1 TTTAAACTTGGGCTTTCGGG

             
       5679 T
          1 T

       5680 AGTAGCTTTG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.15, C:0.12, G:0.29, T:0.44


Consensus pattern (20 bp):   
TTTAAACTTGGGCTTTCGGG
Done.