Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015654.1 Corchorus capsularis cultivar CVL-1 contig15675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6837

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15--160
65
2.2
69
84
8
194
50
16
17
15
1.78
913--946
16
2.1
16
94
0
59
44
17
26
11
1.83
4497--4579
21
3.7
23
77
7
82
37
12
7
43
1.70
4475--4557
23
3.7
23
82
7
84
37
13
9
39
1.77
4316--4677
22
16.8
22
70
13
143
34
15
9
39
1.81
4475--4707
44
5.6
42
70
13
117
31
16
8
42
1.78
4648--4699
20
2.6
20
87
0
77
28
17
9
44
1.80
4805--4905
22
4.6
22
78
10
93
36
12
9
40
1.77
4825--5042
22
9.7
23
70
14
98
36
14
9
40
1.78
4991--5082
22
4.2
22
73
13
75
36
17
7
38
1.78
5270--5334
2
35.0
2
75
20
61
47
1
1
49
1.20
6727--6760
15
2.3
15
90
10
52
61
5
5
26
1.42

Tables:   1

The End!