Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015656.1 Corchorus capsularis cultivar CVL-1 contig15677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95382

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--32
2
15.0
2
100
0
60
50
0
0
50
1.00
1105--1132
2
14.0
2
100
0
56
50
0
0
50
1.00
1418--1511
46
2.0
48
87
4
138
38
12
12
36
1.82
3664--3688
3
8.3
3
100
0
50
68
0
0
32
0.90
11902--11939
1
38.0
1
100
0
76
100
0
0
0
0.00
14954--15006
21
2.5
21
84
0
70
37
18
32
11
1.87
17496--17532
18
2.0
19
89
5
58
62
5
0
32
1.18
19557--19627
26
2.7
27
97
2
135
50
14
4
30
1.61
22245--22287
19
2.3
19
84
11
54
16
11
18
53
1.72
22746--22770
4
6.2
4
100
0
50
52
0
0
48
1.00
25176--25278
31
3.4
31
67
24
92
36
21
18
23
1.95
25117--25278
60
2.7
60
87
0
216
35
17
18
27
1.94
25308--25506
31
6.5
31
70
14
112
30
18
16
35
1.92
25373--25471
29
3.3
29
69
13
85
32
19
14
34
1.91
25339--25502
60
2.7
60
85
5
224
30
18
15
35
1.92
29680--29745
28
2.4
28
78
14
75
42
15
10
31
1.81
37397--37557
59
2.7
58
86
2
214
26
18
19
36
1.95
44231--44393
55
3.0
54
90
3
238
32
18
26
22
1.97
44610--44649
21
1.9
21
94
0
71
25
15
27
32
1.95
44798--44830
17
1.9
17
100
0
66
27
6
36
30
1.81
45182--45545
156
2.3
156
78
9
386
33
20
15
30
1.93
46150--46185
11
3.3
11
100
0
72
50
33
16
0
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48449--48570
60
2.0
60
98
0
235
36
11
10
41
1.76
50022--50073
26
2.0
26
100
0
104
50
11
26
11
1.73
51709--51773
7
9.0
7
85
6
85
69
0
13
16
1.20
51871--51942
36
1.9
38
81
15
89
58
6
16
18
1.60
53556--53587
16
2.0
16
93
0
55
9
43
15
31
1.78
59348--59440
2
51.0
2
69
25
55
52
4
1
41
1.28
59348--59440
5
17.0
6
68
24
55
52
4
1
41
1.28
59346--59435
20
4.7
20
73
21
61
53
4
1
41
1.28
59970--60036
29
2.3
30
86
2
91
34
16
10
38
1.83
60242--60283
19
2.3
18
84
12
50
35
9
2
52
1.47
64277--64325
25
2.0
25
95
0
89
40
22
4
32
1.73
65161--65246
27
3.1
27
85
6
118
31
24
15
29
1.95
66667--66691
12
2.1
12
100
0
50
8
8
40
44
1.63
66705--67053
193
1.8
193
93
0
608
23
14
13
47
1.80
71858--71903
24
2.0
22
87
8
65
47
4
41
6
1.49
87502--87526
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!