Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015657.1 Corchorus capsularis cultivar CVL-1 contig15678, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23334

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1643--1681
19
2.1
19
100
0
78
64
5
20
10
1.44
3311--3463
13
13.0
13
64
19
59
58
0
4
36
1.18
3312--3487
58
3.0
58
100
0
352
57
0
5
37
1.21
4768--4830
31
2.0
31
84
0
81
19
12
6
61
1.51
5562--5626
19
3.1
21
69
20
55
24
3
4
67
1.24
5569--5614
19
2.3
20
85
7
58
26
2
4
67
1.21
5789--5817
15
1.9
15
100
0
58
34
3
0
62
1.12
6094--6135
19
2.2
20
84
16
54
19
7
7
66
1.39
6350--6442
11
8.4
11
79
11
109
43
9
19
27
1.82
6380--6429
24
2.0
25
92
7
84
40
12
18
30
1.86
6450--6602
41
3.7
41
100
0
306
51
11
26
9
1.69
6701--6794
49
1.9
49
100
0
188
52
5
2
40
1.36
7511--7543
9
3.8
9
88
4
50
42
0
9
48
1.35
7599--7651
27
2.0
27
88
3
81
45
9
1
43
1.47
9051--10415
424
3.2
420
86
6
1904
25
13
16
44
1.85
10113--10144
7
4.4
7
96
4
55
3
0
12
84
0.74
10132--10216
19
4.3
19
70
16
55
21
8
5
64
1.42
10173--10214
19
2.2
20
87
8
61
16
9
7
66
1.42
11393--11473
25
3.3
27
63
28
70
6
16
23
54
1.64
11397--11491
47
2.0
47
95
0
172
7
15
24
52
1.68
11820--11935
56
2.1
56
95
0
205
31
12
15
39
1.85
14575--14660
38
2.3
38
97
0
163
18
37
20
23
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16931--16977
17
2.8
17
75
12
60
21
27
10
40
1.86
18187--18216
12
2.5
12
100
0
60
16
33
10
40
1.82
21565--21596
16
2.0
16
100
0
64
50
6
12
31
1.65
21983--22016
16
2.1
17
88
5
52
41
8
2
47
1.50
21992--22043
24
2.3
23
87
12
72
50
5
0
44
1.26
21993--22032
11
3.6
12
77
16
50
45
7
0
47
1.31
21992--22040
22
2.4
21
86
10
66
48
6
0
44
1.27

Tables:   1

The End!